Whole genome shotgun sequencing of FSIS1609291 by Illumina MiSeq - SRA

SRX2443978: Whole genome shotgun sequencing of FSIS1609291 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 483,214 spots, 124.9M bases, 60.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: United States Department of Agriculture, Food Safety and Inspection Service (USDA-FSIS)

Study: FSIS NARMS Campylobacter

PRJNA292668 • SRP063302 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Department of Agriculture surveillance project for NARMS.

Sample:

SAMN06179709 • SRS1878068 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: FSIS1609291 Nextera XT shotgun library

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for FSIS1609291.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 483,214 spots, 124.9M bases, 60.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR5129929	483,214	124.9M	60.2Mb	2016-12-23

ID:: 3550286

SRA

Sequence Read Archive

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