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SRX2511348: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 817,156 spots, 318.3M bases, 159Mb downloads

External Id: EXT00238560
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: New Mexico State University Food Safety Laboratory
PRJNA327813 • SRP090749 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration surveillance project for the rapid detection of food contamination events.
Sample:
SAMN05525224 • SRS1935197 • All experiments • All runs
Organism: Campylobacter jejuni
Library:
Name: Campylobacter jejuni Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 817,156 spots, 318.3M bases, 159Mb
Run# of Spots# of BasesSizePublished
SRR5195738817,156318.3M159Mb2017-01-23

ID:
3637722

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