Nanopore sequencing of Campylobacter jejuni from chicken manure - SRA

SRX19628617: Nanopore sequencing of Campylobacter jejuni from chicken manure
1 OXFORD_NANOPORE (MinION) run: 44,196 spots, 92.4M bases, 80.8Mb downloads

Design: DNA extracted from bacterial culture and sequenced using MinION flow cell R10.4 with Ligation Sequencing Kit SQK-LSK112

Submitted by: Swiss Tropical and Public Health Institute

Study: Campylobacter jejuni subsp. jejuni genome sequencing for One Health Surveillance in Palestine

PRJNA942088 • SRP426543 • All experiments • All runs

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Surveillance of Antimicrobial Resistance in the two food-borne pathogens Salmonella enterica and Campylobacter jejuni in the West Bank, Palestine. A cross-sectional study was conducted in the white meat production chain using isolates from chicken manure, chicken meat sold in markets, and faeces of asymptomatic farm workers.

Sample: Campylobacter jejuni isolated from chicken manure

SAMN33677826 • SRS16998212 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: Campylobacter_jejuni_Chicken_manure_8_2022

Instrument: MinION

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 44,196 spots, 92.4M bases, 80.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR23796566	44,196	92.4M	80.8Mb	2023-03-27

ID:: 26926363

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