Whole genome shotgun sequencing of Campylobacter jejuni by Illumina M... - SRA

SRX2682065: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 541,264 spots, 252.7M bases, 133.5Mb downloads

External Id: EXT00252572

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: CVM NARMS Campylobacter

PRJNA292664 • SRP102667 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of foodborne pathogens as part of the US Food and Drug Administration surveillance project for NARMS.

Sample:

SAMN05608002 • SRS2079372 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: Campylobacter jejuni Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 541,264 spots, 252.7M bases, 133.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR5387042	541,264	252.7M	133.5Mb	2017-03-29

ID:: 3867105

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity