Whole genome shotgun sequencing of Campylobacter jejuni by Illumina M... - SRA

SRX2165972: Whole genome shotgun sequencing of Campylobacter jejuni by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 579,450 spots, 235.1M bases, 114.6Mb downloads

External Id: EXT00215734

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: Washington State Department of Health

PRJNA325644 • SRP089961 • All experiments • All runs

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Whole genome sequencing of cultured Campylobacter jejuni as part of the US Food and Drug Administration surveillance project for the rapid detection of food contamination events.

Sample:

SAMN05249937 • SRS1693889 • All experiments • All runs

Organism: Campylobacter jejuni

Library:

Name: Campylobacter jejuni Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Campylobacter jejuni.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 579,450 spots, 235.1M bases, 114.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR4245517	579,450	235.1M	114.6Mb	2016-09-15

ID:: 3160898

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