Whole-genome sequencing of bacteria from a hospital setting - SRA

SRX21172438: Whole-genome sequencing of bacteria from a hospital setting
1 ILLUMINA (Illumina MiSeq) run: 586,528 spots, 328.2M bases, 224.7Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

show Abstracthide Abstract

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN36729051 • SRS18433770 • All experiments • All runs

Organism: Enterobacter ludwigii

Library:

Name: BWH_484_E_clo

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 586,528 spots, 328.2M bases, 224.7Mb