U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2625638: Lactobacillus johnsonii UBA1153
1 ILLUMINA (Illumina MiSeq) run: 1,368 spots, 41,541 bases, 95,274b downloads

Design: BWA (BWA-MEM) mapping of Lactobacillus johnsonii UBA1153 using version 0.7.12-r1039 and assembled with CLC de novo assembler 4.4.1 with a genome coverage of 20.61
Submitted by: University of Queensland
Study: Recovery of nearly 8,000 uncultivated bacterial and archaeal genomes substantially flesh out the tree of life
show Abstracthide Abstract
Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of high-quality bacterial and archaeal genomes directly from metagenomic data. In this study, we recovered 7,903 uncultivated genomes from >1,000 metagenomes available from the Sequence Read Archive. These genomes increase the phylogenetic diversity of current archaeal and bacterial genome trees by >30%.
Sample: Uncultivated Lactobacillus johnsonii UBA1153 genome recovered from SRX688077
SAMN06450955 • SRS2035595 • All experiments • All runs
Library:
Name: SRX688077.b1.bam
Instrument: Illumina MiSeq
Strategy: WGS
Source: METAGENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 1,368 spots, 41,541 bases, 95,274b
Run# of Spots# of BasesSizePublished
SRR53264431,36841,54195,274b2017-09-14

ID:
3801784

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...