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SRX21802221: WGS of L. johnsonii UMB3423
1 ILLUMINA (Illumina NovaSeq 6000) run: 2.2M spots, 612M bases, 173.5Mb downloads

Design: Illumina sequencing libraries were prepared using the tagmentation-based and PCR-based Illumina DNA Prep kit and custom IDT 10bp unique dual indices (UDI) with a target insert size of 320 bp.
Submitted by: Loyola University Chicago
Study: Female Urinary Microbiota Genome Sequencing
show Abstracthide Abstract
Recently, bacterial communities (microbiota) have been discovered in the female bladder. Thus, the “sterile urine” paradigm is no longer valid. In an effort to provide a comprehensive view of the newly discovered female urinary microbiota (FUM), we have established an Enhanced Quantitative Urine Culture (EQUC) protocol. EQUC isolates bacteria from 75-90% of urine samples deemed 'no growth' by the standard clinical microbiology urine culture method. We have begun to sequence and annotate the genomes of these isolated bacteria.
Sample:
SAMN37434652 • SRS18903228 • All experiments • All runs
Library:
Name: johnsonii3423
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 2.2M spots, 612M bases, 173.5Mb
Run# of Spots# of BasesSizePublished
SRR260875262,220,089612M173.5Mb2023-09-18

ID:
29605586

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