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Taxonomy browser (Propionibacterium freudenreichii)

Propionibacterium freudenreichii

Taxonomy ID: 1744 (for references in articles please use NCBI:txid1744)
current name
Propionibacterium freudenreichii van Niel 1928
type strain of Propionibacterium freudenreichii: ATCC:6207, CCUG:7433, CIP:103026, DSM:20271, HAMBI:274, IFO:12424, BCCM/LMG:16412, NBRC:12424, NCTC:10470, NRRL:B-3523, NCDO:564, NCIMB:5959
homotypic synonym:
Propionibacterium freudenreichii van Niel 1928 emend. Nouioui et al. 2018, emended name 1) in [Nouioui I et al. (2018c)]
Propionicibacterium freudenreichii
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacterium acidi propionici a" von Freudenreich and Orla-Jensen 1907
heterotypic synonym
"Bacterium acidi propionici d" Sherman 1921
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionibacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 10,131 8,563 63
Protein 166,142 149,694 -
Structure 28 2 -
Genome 1 1 -
Popset 11 11 -
GEO Datasets 103 48 -
PubMed Central 1,173 937 -
Gene 7,242 2,286 -
SRA Experiments 111 62 -
Protein Clusters 1,219 1,219 -
Identical Protein Groups 45,515 44,297 -
BioProject 59 45 -
BioSample 212 152 17
Assembly 121 114 -
Taxonomy 7 1 -

Notes:

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Scholz CF & Kilian M (2016)
Scholz, C.F.P., and Kilian, M. "The natural history of cutaneous propionibacteria and reclassification of selected species within the genus Propionibacterium to the proposed novel genera Acidipropionibacterium gen. nov., Cutibacterium gen. nov. and Pseudopropionibacterium gen. nov." Int. J. Syst. Evol. Microbiol. (2016) 66:4422-4432.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
van Niel CB (1928)
van Niel, C.B. (ed.): The propionic acid bacteria, Uitgeverszaak and Boissevain and Co., Haarlem, Holland (1928) pp. 1-187. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Propionibacterium freudenreichii meta-databases BacDive
21 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Propionibacterium freudenreichii culture/stock collections Global Catalogue of Microorganisms
38 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
37 [1] ALA 19 [1] ATCC 6207 [2 1 1] BIO7152 [1 1]
CB129slpB [1 1 2 2091] CCTCC M207015 [1 1] CIP103027 [30 28] CIRM-BIA 118 [1 84 2306]
CIRM-BIA 119 [1 94 2394] CIRM-BIA 121 [1 120 2288] CIRM-BIA 122 [1 158 2330] CIRM-BIA 123 [1 96 2339]
CIRM-BIA 132 [1 1] CIRM-BIA 134 [1 96 2300] CIRM-BIA 135 [1 96 2319] CIRM-BIA 1396 [1 80]
CIRM-BIA 1399 [1 120] CIRM-BIA 1400 [1 389] CIRM-BIA 141 [1 94] CIRM-BIA 1412 [1 81]
CIRM-BIA 1414 [1 79] CIRM-BIA 1472 [1 91] CIRM-BIA 1477 [1 68] CIRM-BIA 1496 [1 1]
CIRM-BIA 1501 [1 89] CIRM-BIA 41 [1 98] CIRM-BIA 456 [1 78 2216] CIRM-BIA 508 [1 96 2284]
CIRM-BIA 512 [1 92 2322] CIRM-BIA 513 [1 98 2395] CIRM-BIA 514 [1 104 2276] CIRM-BIA 515 [1 91]
CIRM-BIA 516 [1 126 2328] CIRM-BIA 527 [1 128 2325] CIRM-BIA 6 [1 366] CIRM-BIA 686 [1 1]
CIRM-BIA 688 [1 1] CIRM-BIA 689 [1 74] CIRM-BIA 691 [1 81] CIRM-BIA 7 [1 75]
CIRM-BIA 704 [1 21] CIRM-BIA1 [1 9 1 1 7] CIRM-BIA118 [1 7 2 2] CIRM-BIA119 [1 2 2]
CIRM-BIA121 [1 2 2] CIRM-BIA122 [1 7 2 2] CIRM-BIA123 [1 7 2 2] CIRM-BIA134 [1 2 2]
CIRM-BIA135 [1 2 2] CIRM-BIA456 [1 2 2] CIRM-BIA508 [2 2] CIRM-BIA512 [1 2 2]
CIRM-BIA513 [1 2 2] CIRM-BIA514 [1 2 2] CIRM-BIA516 [1 2 2] CIRM-BIA527 [1 2 2]
CIRM-BIA9 [1 8 2 2] CIRM118 [7 7] CIRM119 [7 7] CIRM121 [7 7]
CIRM122 [7 7] CIRM123 [7 7] CIRM132 [7 7] CIRM134 [7 7]
CIRM135 [7 7] CIRM141 [7 7] CIRM41 [7 7] CIRM456 [7 7]
CIRM472 [7 7] CIRM474 [7 7] CIRM476 [7 7] CIRM478 [7 7]
CIRM481 [7 7] CIRM482 [7 7] CIRM488 [7 7] CIRM508 [7 7]
CIRM510 [7 7] CIRM511 [7 7] CIRM512 [7 7] CIRM513 [7 7]
CIRM514 [7 7] CIRM515 [7 7] CIRM516 [7 7] CIRM527 [7 7]
CIRM528 [7 7] CIRM529 [7 7] CIRM530 [7 7] CIRM531 [7 7]
CIRM532 [7 7] CIRM533 [7 7] CIRM534 [7 7] CIRM535 [7 7]
CIRM536 [7 7] CIRM537 [7 7] CIRM538 [7 7] CIRM539 [7 7]
CIRM540 [7 7] CIRM541 [7 7] CIRM542 [7 7] CIRM543 [7 7]
CIRM544 [7 7] CIRM545 [7 7] CIRM546 [7 7] CIRM547 [7 7]
CIRM548 [7 7] CIRM549 [7 7] CIRM550 [7 7] CIRM551 [7 7]
CIRM552 [7 7] CIRM553 [7 7] CIRM554 [7 7] CIRM555 [7 7]
CIRM556 [7 7] CIRM610 [7 7] CIRM611 [7 7] CIRM612 [7 7]
CIRM613 [7 7] CIRM614 [7 7] CIRM615 [7 7] CIRM616 [7 7]
CIRM617 [7 7] CIRM618 [7 7] CIRM619 [7 7] CIRM620 [7 7]
CIRM621 [7 7] CIRM622 [7 7] CIRM623 [7 7] CIRM624 [7 7]
CIRM625 [7 7] CIRM626 [7 7] CIRM627 [7 7] CIRM628 [7 7]
CIRM629 [7 7] CIRM630 [7 7] CIRM682 [7 7] CIRM683 [7 7]
CIRM684 [7 7] CIRM685 [7 7] CIRM686 [7 7] CIRM687 [7 7]
CIRM688 [7 7] CIRM689 [7 7] CIRM690 [7 7] CIRM691 [7 7]
CIRM692 [7 7] CIRM693 [7 7] CIRM7 [7 7] CIRM701 [7 7]
CIRM702 [7 7] CIRM704 [7 7] CIRM8 [7 7] CIRM9 [7 7]
DF2 [1 2 1] DSM 20271 [1 12 11 6 2334] DSM 20271. [1 12 11 6 2334] DSM 4902 [5 2 2]
DSM _20271 [1 12 11 6 2334] DSM _4902 [5 2 2] DSMZ 20271 [1] FAM 14217 [1 2]
FAM 23849 [1] FAM1414 [1 54] FAM14176 [1 1 7] FAM14177 [1 5 1 7]
FAM14184 [1 53 1 7] FAM14193 [1 46 1 7] FAM14197 [1 53 1 7] FAM14217 [1 1 1 7]
FAM14218 [1 1 8] FAM14221 [1 3 1 2236] FAM14222 [1 29 1 7] FAM15061 [1 51 1 8]
FAM15078 [1 57 1 7] FAM15113 [1 76 1 8] FAM15170 [1 74] FAM15190 [1 113]
FAM15192 [1 98] FAM15300 [1 78] FAM15333 [1 103] FAM15346 [1 62]
FAM15347 [1 86] FAM15381 [1 60] FAM15407 [1 68] FAM19014 [1 1 7]
FAM19015 [1 48 1 7] FAM19016 [1 43] FAM19019 [1 5] FAM19020 [1 90 1 6]
FAM19022 [1 92 1 7] FAM19023 [1 52 1 7] FAM19024 [1 3 1 2300] FAM19025 [1 3 1 2239]
FAM19026 [1 1 7] FAM19028 [1 1 9] FAM19030 [1 102 1 8] FAM19031 [1 98 1 8]
FAM19032 [1 1 8] FAM19033 [1 6] FAM19034 [1 74 1 8] FAM22019 [1 99 1 6]
FAM22020 [1 82 1 5] FAM22021 [1 2 1 9] FAM23848 [1 87 1 5] FAM23850 [1 1 6]
FAM23851 [1 1 7] FAM23852 [1 121 1 8] FAM23853 [1 133 1 8] FAM23854 [1 1 6]
FAM23855 [1 110 1 6] FAM23863 [1 1 7] FAM23864 [1 86 1 8] FAM23866 [1 1 7]
FAM23867 [1 68 1 8] FAM23868 [1 76 1 7] FAM23869 [1 101 1 7] FAM23870 [1 90]
FAM23877 [1 3 1 2342] FAM24252 [1 113] GKVK [1] GN-1 [1]
IFO 12424 [15 5] IFO12424 [2 7] ISU P59 [1] ITG P1 [2 210 2437]
ITG P14 [1 88 2245] ITG P18 [1 118 2316] ITG P20 [1 1 233 2309] ITG P23 [1 94 2336]
ITG P9 [2 2] ITGP18 [7 7] ITGP20 [7 7] ITGP23 [7 7]
ITGP9 [7 7] KG1-1 [1] KG1-2 [1] LMG16545 [1 2 2]
LMGT 2946 [1 7] LSP108 [1 1] MJ2 [1 2] NUV 766 [1]
NUV 767 [1] NUV 768 [1] NUV 769 [1] NUV 770 [1]
NUV 771 [1] NUV 772 [1] NUV 773 [1] NUV 774 [1]
P.UF1 [1 7 7 2 2221] PAARW081 [1] PBA 115 [2 2 2] PBA 120 [2 2 2]
PBA 147 [2 2 2] PBA 150 [2 2 2] PBA 35 [2 2 2] PBA 96 [2 2 2]
PBD 255 [2 2 2] PBR 16 [2 2 2] PBR 2 [2 2 2] PBR 4 [2 2 2]
PBR 9 [2 2 2] PZ3 [2 3] Pr1 [1 1] Pr2 [1 1]
Pr3 [1 1] Pr4 [1 1] Pr5 [1 1] Propionibacterium freudenreichii [2]
RVS-2 ims [1] RVS-4-irf [1] SC0 [1] T82 [1 1 118]
TL1001 [7 7] TL1004 [7 7] TL1014 [7 7] TL1041 [7 7]
TL1045 [7 7] TL1079 [7 7] TL1089 [7 7] TL110 [2 2 2162 13]
TL1122 [7 7] TL1263 [7 7] TL19 [2 2 2182 15] TL214 [7 7]
TL29 [2 2 2162 16] TL566 [7 7] TL600 [7 7] TL929 [7 7]
isolate JS53 [1]
isolate
ERR260214-bin.16 [413] JS53 [2] MGYG-HGUT-02401 [2] PFRJS-23 [5 2467]
PFRJS11 [2 2200] PFRJS12 [2 2274] PFRJS12-1 [2 2275] PFRJS12-3 [1 32]
PFRJS13 [2 4390] PFRJS14 [2 2180] PFRJS15 [2 4642] PFRJS17 [2 4909]
PFRJS18 [2 2358] PFRJS2 [2 2310] PFRJS20 [2 4760] PFRJS21 [2 4659]
PFRJS22 [1 61] PFRJS22-genome [2 2326] PFRJS25 [4 2382] PFRJS4 [2 2366]
PFRJS7 [3 4826] PFRJS8 [2 2324] PFRJS9 [2 4806] PFRJS_23 [5 2467]
nat-host
Homo sapiens [1] cow [1]
sub-species
shermanii Propionibacterium freudenreichii subsp. shermanii
culture-collection
DSM:20271 [11 6 2334] DSM:4902 [4 2 2] DSM:_20271 [11 6 2334] DSM:_4902 [4 2 2]
ITG:P18 [2 2] ITG:P20 [2 2] ITG:P23 [2 2] ITG:P9 [2 2]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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