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Taxonomy browser (Halobacterium salinarum R1)

Halobacterium salinarum R1

Taxonomy ID: 478009 (for references in articles please use NCBI:txid478009)
current name
Halobacterium salinarum R1
equivalent:
Halobacterium salinarum strain R1
NCBI BLAST name: euryarchaeotes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Halobacterium salinarum CGMCC 1.3323
heterotypic synonym
Halobacterium salinarum DSM 671
equivalent:
Halobacterium salinarum str. R1
Lineage( full )
cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium; Halobacterium salinarum; Halobacterium salinarum NRC-34001
   Entrez records   
Database name Direct links
Nucleotide 61
Protein 3,480
Structure 19
Genome 1
PubMed Central 9
Gene 3,335
Identical Protein Groups 2,825
BioProject 3
BioSample 1
Assembly 1
PubChem BioAssay 2
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Pfeiffer F & Dyall-Smith M (2023), doi:10.1002/mbo3.1365
Pfeiffer, F., and Dyall-Smith, M. "Genome comparison reveals that Halobacterium salinarum 63-R2 is the origin of the twin laboratory strains NRC-1 and R1." MicrobiologyOpen (2023) 12(3):e1365.
Pfeiffer F et al. (2008)
Pfeiffer, F., Schuster, S.C., Broicher, A., Falb, M., Palm, P., Rodewald, K., Ruepp, A., Soppa, J., Tittor, J., and Oesterhelt, D. "Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1." Genomics (2008) 91:335-346.
Pfeiffer F et al. (2019), other link:https://mra.asm.org/content/8/28/e00429-19
Pfeiffer, F., Marchfelder, A., Habermann, B., and Dyall-Smith, M.L. "The genome sequence of the Halobacterium salinarum type strain is closely related to that of laboratory strains NRC-1 and R1." Microbiol. Resour. Announc. (2019) 8:e00429-19.
Pfeiffer F et al. (2020)
Pfeiffer, F., Losensky, G., Marchfelder, A., Habermann, B., and Dyall-Smith, M. "Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754(T) ) and the laboratory strains R1 and NRC-1." MicrobiologyOpen (2020) 9(2):e974.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Halobacterium salinarum R1 meta-databases BacDive
2 records from this provider organism-specific BioCyc
GOLD: Go0002300 organism-specific Genomes On Line Database
2 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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