ID 866809 - BioProject

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Accession: PRJEB55193 ID: 866809

EMG produced TPA metagenomics assembly of PRJNA597176 data set (global study of tomato bacterial wilt soil microbiome).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA597176, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55193
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 6-Aug-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8771
WGS master	83
Publications
PubMed	1
PMC	1
Other datasets
BioSample	83
Assembly	83

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

83
83

Assembly	WGS	BioSample	Taxonomy
GCA_946481125.1	CAMLMS000000000	SAMEA110698903	Achromobacter xylosoxidans
GCA_946480235.1	CAMLJG000000000	SAMEA110698935	Acinetobacter bereziniae
GCA_946479795.1	CAMLHH000000000	SAMEA110698927	Acinetobacter tandoii
GCA_946478685.1	CAMLDF000000000	SAMEA110698933	Acinetobacter tandoii
GCA_946479345.1	CAMLFO000000000	SAMEA110698951	Alcaligenes faecalis
GCA_946479485.1	CAMLGL000000000	SAMEA110698940	Bacteroides graminisolvens
GCA_946478695.1	CAMLEJ000000000	SAMEA110698929	Bacteroides reticulotermitis
GCA_946482215.1	CAMLQX000000000	SAMEA110698923	Burkholderia vietnamiensis
GCA_946479625.1	CAMLGW000000000	SAMEA110698942	Chryseobacterium cucumeris
GCA_946481325.1	CAMLND000000000	SAMEA110698939	Chryseobacterium culicis
GCA_946481395.1	CAMLNM000000000	SAMEA110698894	Chryseobacterium indologenes
GCA_946479465.1	CAMLGA000000000	SAMEA110698934	Comamonas aquatica
GCA_946480045.1	CAMLIM000000000	SAMEA110698948	Comamonas thiooxydans
GCA_946479875.1	CAMLIP000000000	SAMEA110698913	Cupriavidus necator
GCA_946479425.1	CAMLFW000000000	SAMEA110698947	Enterobacter ludwigii
GCA_946482055.1	CAMLQB000000000	SAMEA110698915	Enterobacter soli
GCA_946479525.1	CAMLGK000000000	SAMEA110698953	Leeia oryzae
GCA_946478825.1	CAMLEC000000000	SAMEA110698926	Novimethylophilus kurashikiensis
GCA_946480005.1	CAMLHV000000000	SAMEA110698895	Pectobacterium carotovorum
GCA_946479645.1	CAMLGX000000000	SAMEA110698950	Pseudomonas mendocina
GCA_946482195.1	CAMLQR000000000	SAMEA110698931	Ralstonia solanacearum
GCA_946479065.1	CAMLEG000000000	SAMEA110698897	Sphingobacterium mizutaii
GCA_946478945.1	CAMLES000000000	SAMEA110698900	Sphingobacterium thalpophilum
GCA_946480255.1	CAMLIO000000000	SAMEA110698937	Stenotrophomonas acidaminiphila
GCA_946480285.1	CAMLJF000000000	SAMEA110698881	Stenotrophomonas maltophilia
GCA_946479725.1	CAMLHB000000000	SAMEA110698904	uncultured Actinomycetes bacterium
GCA_946479545.1	CAMLGI000000000	SAMEA110698949	uncultured Agrobacterium sp.
GCA_946479335.1	CAMLFP000000000	SAMEA110698946	uncultured Archangium sp.
GCA_946478885.1	CAMLDX000000000	SAMEA110698919	uncultured Bacillus sp.
GCA_946479615.1	CAMLGR000000000	SAMEA110698886	uncultured Bacteroidetes bacterium
GCA_946479675.1	CAMLGV000000000	SAMEA110698879	uncultured Bacteroidetes bacterium
GCA_946479535.1	CAMLGP000000000	SAMEA110698874	uncultured Bacteroidetes bacterium
GCA_946478835.1	CAMLDV000000000	SAMEA110698922	uncultured Bdellovibrio sp.
GCA_946479325.1	CAMLFN000000000	SAMEA110698891	uncultured Brevundimonas sp.
GCA_946480155.1	CAMLJD000000000	SAMEA110698884	uncultured Burkholderiaceae bacterium
GCA_946478655.1	CAMLDG000000000	SAMEA110698885	uncultured Candidatus Nitrosotalea sp.
GCA_946479025.1	CAMLDM000000000	SAMEA110698905	uncultured Candidatus Saccharibacteria bacterium
GCA_946478715.1	CAMLDA000000000	SAMEA110698883	uncultured Candidatus Saccharibacteria bacterium
GCA_946479755.1	CAMLHC000000000	SAMEA110698907	uncultured Chitinophaga sp.
GCA_946479865.1	CAMLIC000000000	SAMEA110698911	uncultured Chloroflexota bacterium
GCA_946479445.1	CAMLFZ000000000	SAMEA110698944	uncultured Comamonadaceae bacterium
GCA_946478725.1	CAMLEE000000000	SAMEA110698930	uncultured Cupriavidus sp.
GCA_946480165.1	CAMLJC000000000	SAMEA110698889	uncultured Delftia sp.
GCA_946482635.1	CAMLSG000000000	SAMEA110698954	uncultured Duganella sp.
GCA_946479385.1	CAMLFU000000000	SAMEA110698941	uncultured Flavobacteriales bacterium
GCA_946478675.1	CAMLEF000000000	SAMEA110698882	uncultured Flavobacteriales bacterium
GCA_946479395.1	CAMLFV000000000	SAMEA110698892	uncultured Flavobacterium sp.
GCA_946479315.1	CAMLFM000000000	SAMEA110698893	uncultured Flavobacterium sp.
GCA_946479905.1	CAMLIA000000000	SAMEA110698914	uncultured Frankiales bacterium
GCA_946479995.1	CAMLIU000000000	SAMEA110698899	uncultured Gemmatimonadota bacterium
GCA_946479565.1	CAMLGM000000000	SAMEA110698887	uncultured Gemmatimonadota bacterium
GCA_946479635.1	CAMLGU000000000	SAMEA110698888	uncultured Gemmatimonadota bacterium
GCA_946480295.1	CAMLIT000000000	SAMEA110698875	uncultured Gemmatimonadota bacterium
GCA_946478895.1	CAMLDY000000000	SAMEA110698902	uncultured Gemmatimonadota bacterium
GCA_946479015.1	CAMLEQ000000000	SAMEA110698910	uncultured Gemmatimonadota bacterium
GCA_946479825.1	CAMLHU000000000	SAMEA110698880	uncultured Gemmatimonadota bacterium
GCA_946479895.1	CAMLHT000000000	SAMEA110698909	uncultured Gemmatimonadota bacterium
GCA_946481385.1	CAMLNL000000000	SAMEA110698945	uncultured Hydrogenophaga sp.
GCA_946479475.1	CAMLGG000000000	SAMEA110698952	uncultured Ideonella sp.
GCA_946479605.1	CAMLGT000000000	SAMEA110698938	uncultured Lacibacter sp.
GCA_946480075.1	CAMLIW000000000	SAMEA110698890	uncultured Lysobacter sp.
GCA_946478965.1	CAMLDQ000000000	SAMEA110698917	uncultured Methylobacillus sp.
GCA_946478865.1	CAMLDO000000000	SAMEA110698920	uncultured Methylobacillus sp.
GCA_946479685.1	CAMLGS000000000	SAMEA110698936	uncultured Methylotenera sp.
GCA_946481065.1	CAMLMA000000000	SAMEA110698956	uncultured Nitrosomonadales bacterium
GCA_946478925.1	CAMLDP000000000	SAMEA110698912	uncultured Nitrososphaera sp.
GCA_946479785.1	CAMLHQ000000000	SAMEA110698878	uncultured Nitrospira sp.
GCA_946479775.1	CAMLHS000000000	SAMEA110698921	uncultured Paenibacillaceae bacterium
GCA_946478845.1	CAMLDI000000000	SAMEA110698925	uncultured Paenibacillaceae bacterium
GCA_946478735.1	CAMLDS000000000	SAMEA110698928	uncultured Paraburkholderia sp.
GCA_946479365.1	CAMLFS000000000	SAMEA110698955	uncultured Pseudogulbenkiania sp.
GCA_946478905.1	CAMLEP000000000	SAMEA110698916	uncultured Pseudomonas sp.
GCA_946479695.1	CAMLGY000000000	SAMEA110698943	uncultured Pseudomonas sp.
GCA_946479095.1	CAMLEI000000000	SAMEA110698896	uncultured Pseudomonas sp.
GCA_946480145.1	CAMLIR000000000	SAMEA110698898	uncultured Pseudoxanthomonas sp.
GCA_946478985.1	CAMLDZ000000000	SAMEA110698906	uncultured Solimonas sp.
GCA_946478955.1	CAMLDL000000000	SAMEA110698908	uncultured Sphingomonas sp.
GCA_946478975.1	CAMLEO000000000	SAMEA110698901	uncultured Steroidobacter sp.
GCA_946479405.1	CAMLGD000000000	SAMEA110698932	uncultured Vogesella sp.
GCA_946478745.1	CAMLCY000000000	SAMEA110698877	uncultured bacterium
GCA_946479515.1	CAMLGF000000000	SAMEA110698876	uncultured proteobacterium
GCA_946480245.1	CAMLIZ000000000	SAMEA110698924	uncultured proteobacterium
GCA_946479855.1	CAMLHL000000000	SAMEA110698918	uncultured proteobacterium

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EMG produced TPA metagenomics assembly of PRJNA597176 data set (global study of tomato bacterial wilt soil microbiome).

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