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BioSample

National Center for Biotechnology Information

Result Filters

Metagenome-assembled genome: SRR10754056_bin.11_metawrap_v1.3.0_MAG

Identifiers: BioSample: SAMEA110698889; SRA: ERS12796427

Organism: uncultured Delftia sp.
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia; environmental samples

Attributes

broad-scale environmental context	plant
collection date	2017-09-27
environmental medium	rhizoplane
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	rhizoplane metagenome
project name	explore the compositional and functional difference of soil microbiome between healthy group and tomato bacterial wilt infected group
sample name	SRR10754056_bin.11_metawrap_v1.3.0_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-24
ENA-LAST-UPDATE	2022-08-24
External Id	SAMEA110698889
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-08-24T12:18:12Z
INSDC last update	2022-08-24T12:18:12Z
INSDC status	public
Submitter Id	SRR10754056_bin.11_metawrap_v1.3.0_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3.0
broker name	EMG broker account, EMBL-EBI
completeness score	83.47
completeness software	CheckM
contamination score	1.69
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	tomato
metagenomic source	rhizoplane metagenome
sample derived from	SAMN13669127
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Delftia;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR10754056 of study SRP238496.