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BioSample

National Center for Biotechnology Information

Result Filters

Metagenome-assembled genome: ERR5094855_bin.4_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111477118; SRA: ERS13571154

Organism: Lelliottia amnigena
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Lelliottia

Attributes

broad-scale environmental context	Rainbow trout digestive system
collection date	not provided
environmental medium	Gut content
geographic location	France
investigation type	metagenome-assembled genome
isolation source	fish gut metagenome
project name	Shotgun metagenomics sequencing results for intestinal samples collected from rainbow trout farms in three European countries.
sample name	ERR5094855_bin.4_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-10-16
ENA-LAST-UPDATE	2022-10-16
External Id	SAMEA111477118
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-10-16T20:28:45Z
INSDC last update	2022-10-16T20:28:45Z
INSDC status	public
Submitter Id	ERR5094855_bin.4_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	99.04
completeness software	CheckM
contamination score	0.57
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	Gut
metagenomic source	fish gut metagenome
sample derived from	SAMEA7816510
sequencing method	NextSeq 550
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Lelliottia;s__Lelliottia amnigena
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR5094855 of study ERP126324.