Metagenome-Assembled Genome (MAG)

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Acidiphilium sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human gut
environmental medium	faeces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human gut
project name	Human gut MAGs
sample name	ERR1600716-bin.49
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2021-01-23T04:12:02Z
ENA-LAST-UPDATE	2021-01-21T23:03:07Z
External Id	SAMEA7847024
INSDC center name	EMG
INSDC first public	2021-01-23T04:12:02Z
INSDC last update	2021-01-21T23:03:07Z
INSDC status	public
Submitter Id	ERR1600716-bin.49
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	default
binning software	MetaWRAP v1.1
broker name	EBI-EMG
completeness score	85.07
completeness software	CheckM v1.0.11
contamination score	1.24
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	ERS1297023
scientific_name	uncultured Acidiphilium sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG from the metagenomic run ERR1600716

BioProject: PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
Retrieve all samples from this project