Metagenome-Assembled Genome (MAG)

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Result Filters

Organism: uncultured Bacteroides sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human gut
environmental medium	faeces
geographic location	Denmark
investigation type	metagenome-assembled genome
isolation source	human gut
project name	Human gut MAGs
sample name	ERR321649-bin.9
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2021-01-23T17:08:37Z
ENA-LAST-UPDATE	2021-01-21T23:10:30Z
External Id	SAMEA7847548
INSDC center name	EMG
INSDC first public	2021-01-23T17:08:37Z
INSDC last update	2021-01-21T23:10:30Z
INSDC status	public
Submitter Id	ERR321649-bin.9
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades_v3.11.1
binning parameters	default
binning software	MetaWRAP v1.1
broker name	EBI-EMG
completeness score	89.00
completeness software	CheckM v1.0.11
contamination score	1.69
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	ERS329000
scientific_name	uncultured Bacteroides sp.
sequencing method	Illumina Genome Analyzer II
taxonomic identity marker	multi-marker approach

Description: This sample represents a MAG from the metagenomic run ERR321649

BioProject: PRJEB37358 Uncultured novel prokaryotic genomes associated with metabolic diseases such as T2D and T2D-related comorbidities
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