| broad-scale environmental context | Rainbow trout digestive system |
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| collection date | not provided |
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| environmental medium | Gut content |
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| geographic location | Spain |
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| investigation type | metagenome-assembled genome |
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| isolation source | fish gut metagenome |
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| project name | Shotgun metagenomics sequencing results for intestinal samples collected from rainbow trout farms in three European countries. |
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| sample name | ERR5094867_bin.3_metaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-10-16 |
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| ENA-LAST-UPDATE | 2022-10-16 |
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| External Id | SAMEA111477161 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-10-16T20:28:46Z |
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| INSDC last update | 2022-10-16T20:28:46Z |
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| INSDC status | public |
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| Submitter Id | ERR5094867_bin.3_metaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
|---|
| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 51.72 |
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| completeness software | CheckM |
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| contamination score | 1.72 |
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| geographic location (latitude) | not provided |
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| geographic location (longitude) | not provided |
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| local environmental context | Gut |
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| metagenomic source | fish gut metagenome |
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| sample derived from | SAMEA7816522 |
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| sequencing method | NextSeq 550 |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus johnsonii |
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| taxonomic identity marker | multi-marker approach |
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