GEO DataSets

(Submitter supplied) Investigation of whole genome gene expression level changes in Lcr35® pharmaceutical formulations, compared to the native strain.

Organism:

Lactobacillus; Lacticaseibacillus rhamnosus

Type:

Expression profiling by array

Platform:

GPL18863

9 Samples

Download data: CALLS, PAIR

(Submitter supplied) Understanding how the human gut microbiota and host are impacted by probiotic bacterial strains requires carefully controlled studies in humans, and in mouse models of the gut ecosystem where potentially confounding variables that are difficult to control in humans can be constrained. Therefore, we characterized the fecal microbiomes and metatranscriptomes of adult female monozygotic twin pairs through repeated sampling 4 weeks prior to, 7 weeks during, and 4 weeks following consumption of a commercially-available fermented milk product (FMP) containing a consortium of Bifidobacterium animalis subsp. more...

Organism:

Ruminococcus; Bacteroides; Collinsella; Lactobacillus; Lactobacillus delbrueckii subsp. bulgaricus; human gut metagenome; Bifidobacterium animalis subsp. lactis CNCM I-2494; Streptococcus thermophilus CNCM I-1630; Streptococcus thermophilus; Clostridia; Parabacteroides; Lactococcus lactis subsp. lactis CNCM I-1631

Type:

Expression profiling by high throughput sequencing

4 related Platforms

73 Samples

Download data: TXT

(Submitter supplied) NimbleGen design name 110518_Lactobacillus_str_AN, NimbleGen design ID 552981. A 1:2 expression design for 7,303 genes from 25 Lactobacillus species with 2 or 3 45-60-mer probe pairs (PM/MM) per gene. Each probe is replicated 3 times. The design includes random GC and other control probes. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Organism:

Lactobacillus

1 Series

9 Samples

Download data: NDF, NGD, TXT