GEO DataSets

(Submitter supplied) Streptococcus suis is a major pig pathogen as well as an emerging zoonotic pathogen. Previous work has demonstrated that the S. suis extracellular amylopullulanase enzyme (ApuA) that degrades {alpha}-glucans also functions as an adhesin for porcine epithelial cells. To identify the mechanisms linking carbohydrate metabolism and virulence, we first compared the transcriptome of S. suis in minimal medium supplemented with glucose to minimal medium containing a complex carbohydrate pullulan as a carbon source. more...

Organism:

Streptococcus suis P1/7; Streptococcus suis

Type:

Expression profiling by array

Platform:

GPL16024

16 Samples

Download data: TXT

(Submitter supplied) Streptococcus suis 2 Rgg-dependent transcription was analyzed.

Organism:

Streptococcus suis 05ZYH33

Type:

Expression profiling by array

Platform:

GPL10447

2 Samples

Download data: TXT

(Submitter supplied) According to the whole genome sequence of 05ZYH33 (NC_009442), specific oligo-nucleotide probes with an average length of 35 nt were designed to cover every putative ORF (2194 in total) in SS2 genome using Array Designer 2.0 and then synthesized onto complementary metal oxide semiconductor (CMOS) matrix utilizing in situ electrochemical synthesis technique.

Organism:

Streptococcus suis 05ZYH33

1 Series

2 Samples

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(Submitter supplied) Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. In this study,we evaluated the genetic difference of 40 Streptococcus suis strains belonging to various sequence types by comparative genomic hybridization to identify genes associated with the variation in pathogenicity using NimbleGen’s tilling microarray platform. Application of Comparative Phylogenomics to Identify Genetic Differences Relating to Pathogenicity of Streptococcus suis

Organism:

Streptococcus suis

Type:

Genome variation profiling by genome tiling array

Platforms:

GPL15924 GPL15923

80 Samples

Download data: PAIR, TXT

(Submitter supplied) To investigate the gene transcription profiles of Streptococcus suis in the planktonic state and biofilm state, we provided samples cultured for 8 h in the planktonic state and samples cultured for 24 h in vitro biofilm. We then performed gene expression profiling analysis using data obtained from RNA-seq of 2 different samples at two time points.

Organism:

Streptococcus suis

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30562

4 Samples

Download data: XLS