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Platform GPL16024 Query DataSets for GPL16024
Status Public on Mar 18, 2014
Title Agilent SSU 8 x 15K (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Streptococcus suis
Manufacturer Agilent Technologies
Manufacture protocol SSU 8 x 15K is produced by Agilent Technologies, according to their standard protocols: Both catalog and custom microarrays are manufactured using a proprietary non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. Precise quantities are reproducibly deposited on the fly. This engineering feat is achieved without stopping, to make contact with the slide surface and without introducing surface-contact feature anomalies, resulting in consistent spot uniformity and traceability. In addition, multiple microarrays can be printed simultaneously in a single manufacturing run.
 
Description platform ID EBI (ArrayExpress): A-MEXP-1671
platform description EBI (ArrayExpress): http://www.ebi.ac.uk/arrayexpress/arrays/A-MEXP-1671
 
Submission date Sep 06, 2012
Last update date Dec 16, 2016
Contact name Peter van Baarlen
E-mail(s) peter.vanbaarlen@wur.nl
Organization name Wageningen University
Department Animal Sciences
Lab Host-Microbe Interactomics
Street address De Elst 1
City Wageningen
ZIP/Postal code 6708 WD
Country Netherlands
 
Samples (32) GSM998928, GSM998929, GSM998930, GSM998931, GSM998932, GSM998933 
Series (2)
GSE40658 Carbohydrates Regulate Virulence Gene Expression in Streptococcus suis
GSE74507 The dynamic transcriptome of natural competence in Streptococcus suis
Relations
Alternative to GPL22805

Data table header descriptions
ID
OLIGO_ID Internal ID of the clone
SEQUENCE sequence of the oligonucleotide
ORF corresponding locus tag on the Streptococcus suis genome sequence (NCBI Entrez Gene/Refseq)
SPOT_ID

Data table
ID OLIGO_ID SEQUENCE ORF SPOT_ID
1 (+)E1A_r60_1 control_spike_calibration
2 (+)E1A_r60_3 control_spike_calibration
3 (+)E1A_r60_a104 control_spike_calibration
4 (+)E1A_r60_a107 control_spike_calibration
5 (+)E1A_r60_a135 control_spike_calibration
6 (+)E1A_r60_a20 control_spike_calibration
7 (+)E1A_r60_a22 control_spike_calibration
8 (+)E1A_r60_a97 control_spike_calibration
9 (+)E1A_r60_n11 control_spike_calibration
10 (+)E1A_r60_n9 control_spike_calibration
11 (+)eQC-39 control_biosequence
12 (+)eQC-40 control_biosequence
13 (+)eQC-41 control_biosequence
14 (+)eQC-42 control_biosequence
15 (-)3xSLv1 control_empty
16 AS1SSU0001#1 AGGTTCTAGCCGATAATCCCCAGGCAAGGATAAAATATGTCTCATCGGAAACATTCATCA SSU0001
17 AS1SSU0001#2 TCCCTTCCAAAAATTGGGAAAGAATTTGGTAATCGAGACCATACAACCGTTATGCATGCA SSU0001
18 AS1SSU0001#3 CGAAGAGTTAATGATTGCCGCTAGTTTTGAAAGCTACGGAGAGCCTCTTACCATCCAATA SSU0001
19 AS1SSU0001#4 TAACAAGTGCGAGAACCTGCCTTACAACTTTACAAATGAGACGCTATCCTATCTAGCTGG SSU0001
20 AS1SSU0002#1 TAGAAGGTACCTACCCTGATACCGACCGCTTAATTCCAACTGAGTTTAAAACAACTGCAA SSU0002

Total number of rows: 7711

Table truncated, full table size 659 Kbytes.




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