GEO DataSets

(Submitter supplied) HuMiChip was used to analyze human oral and gut microbiomes, showing significantly different functional gene profiles between oral and gut microbiome.

Organism:

human metagenome

Type:

Other

Platform:

GPL18196

86 Samples

Download data: EXP

(Submitter supplied) A phylogenetic microarray targeting 66 families described in the human gut microbiota has been developped aud used to monitor the gut microbiota's structure and diversity. The microarray format provided by Agilent and used in this study is 8x15K. A study with a total of 4 chips was realized.

Organism:

Lactobacillus acidophilus; human gut metagenome; Bacteroides fragilis; uncultured bacterium; Escherichia coli; Blautia coccoides; [Clostridium] leptum

Type:

Expression profiling by array

Platform:

GPL16731

4 Samples

Download data: TXT

(Submitter supplied) HuMiChip2 was applied to analyze perform both strain-level identification and the functional profiling of human gut microbiomes from alcoholic cirrhosis patients and healthy individuals with alcohol abuse.

Organism:

human metagenome

Type:

Other

Platform:

GPL22376

18 Samples

Download data: TXT

(Submitter supplied) Human saliva microbiota is phylogenetically divergent among host individuals yet their roles in health and disease are poorly appreciated. We employed a microbial functional gene microarray, HuMiChip 1.0, to reconstruct the global functional profiles of human saliva microbiota from ten healthy and ten caries-active adults. Saliva microbiota in the pilot population featured a vast diversity of functional genes. more...

Organism:

human metagenome; human oral metagenome

Type:

Genome variation profiling by array

Platform:

GPL17575

20 Samples

Download data: EXP

(Submitter supplied) Distal gut bacteria play a pivotal role in the digestion of dietary polysaccharides by producing a large number of carbohydrate-active enzymes (CAZymes) that the host otherwise does not produce. We report here the design of a high density custom microarray that we used to spot non-redundant DNA probes for more than 6,500 genes encoding glycoside hydrolases and lyases selected from 174 reference genomes from distal gut bacteria. more...

Organism:

human gut metagenome

Type:

Genome variation profiling by array

Platform:

GPL17807

8 Samples

Download data: TXT