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Platform GPL10040 Query DataSets for GPL10040
Status Public on Sep 10, 2010
Title Chr. Hansen A/S_Bifidobacterium animalis subsp lactis BB12_1689_v1.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Bifidobacterium animalis subsp. lactis
Manufacturer Chr. Hansen A/S
Manufacture protocol DNA oligos were purchased from Bioneer Corporation at 50nmol synthesis scale with BioRP purification and in lyophilized state (Daedeok-gu, Daejeon, South Korea). Oligos were dissolved at 10uM in 50% DMSO and printed in 4 replicates on UltraGAPS slides (Corning B.V., Schiphol-Rijk, The Netherlands) using a Genpak ARRAY 21 arrayer (Genetix Ltd., Hampshire, United Kingdom) with 16 SMP3 pins, (TeleChem International Inc., Sunnyvale, CA) giving a spot diameter of 100-120mm. Washing was performed between each print cycle for 20s in water followed by 20s in 70% ethanol. The relative humidity was kept at 48 ± 5% by placing a water bath at the appropriate temperature below the air inlet of the arrayer. The oligos were cross-linked to the surface using a Stratalinker 1800 UV Crosslinker set at 70mJ/cm2 (Stratagene). Printed arrays were stored in aluminium pouches with five arrays each and silica gel to remove humidity.
Support glass
Coating aminosilane
 
 
Web link http://www.chr-hansen.com
Contributor(s) Garrigues C, Pedersen MB
Submission date Feb 12, 2010
Last update date Sep 10, 2010
Contact name Martin Bastian Pedersen
E-mail(s) martinbastianpedersen@gmail.com
Organization name Sacco Srl
Department R&D
Street address Via Manzoni 29
City Cadorago
State/province CO
ZIP/Postal code IT-22071
Country Italy
 
Samples (3) GSM509238, GSM509239, GSM538931
Series (2)
GSE20322 Transcriptome analysis of Bifidobacterium animalis subsp. lactis BB12 grown on xylo-oligosaccharides
GSE21588 Genes involved in synthesis of lipoteichoic acids are induced when Bifidobacterium animalis subsp. lactis BB12 is incubated with Human Enterocyte-Like Caco-2 Cells

Data table header descriptions
ID
ORF Locus tag
GENOME_ACC GenBank accession.version from which ORFs are derived
SEQUENCE Sequence of 65-75mer DNA oligo (probe)
SPOT_ID

Data table
ID ORF GENOME_ACC SEQUENCE SPOT_ID
BIF_01747 BIF_01747 CP001853.1 CCGAGCAGCAGGGCGTGTACGTGCAGATCAAGGACTTCCAGGACTACACGAGCGAGAATCCGGCACTGGCGCAGG
BIF_01746 BIF_01746 CP001853.1 GATGGCCTCACCTTCCACCGCATCATCAAGGATTTCATGATCCAGGGCGGTTGCCCGCTGGGCACCG
BIF_00176 BIF_00176 CP001853.1 TGCTTGGGTTCAAGCTCAATCTCGAACTGCTTTTCACCACCGGCGCGAAGTGTCTGCCCCTTGCCGCGCTCGT
BIF_00065 BIF_00065 CP001853.1 GGATGCGCAGCATATGCTGTTCTCGGCCACGCTCGATCATGGCGTGGACGAGGTGGTCAGTGAATTCCTGCATG
BIF_01797 BIF_01797 CP001853.1 CACGGCCGATATCGACGACACACAGACCATCGCACCTGTACATTCCGATAGCTCCCGTGGCGCACGCACCGT
BIF_01798 BIF_01798 CP001853.1 CATCTCGGCACCAGCTCGTTGTGTCCTCCGACCTCGAACGTTCGATGCAGACGGCACATGCCTTCGCCGATA
BIF_01799 BIF_01799 CP001853.1 AATGCTTTGGAACAATCCATCAATTCGGTGCGCGTCGCCGCGACTGCGGCCGATGGCATGAAGGC
BIF_00738 BIF_00738 CP001853.1 CCACCGTGCTCACCACCGTGCTTGACGACCCGACTGGATATGGTCGCATCATTCGCGATGCCGACG
BIF_00739 BIF_00739 CP001853.1 TTCTCGTAACAGGCAGGGCGCATCCCAAGCTGGCCACCGACGTTGCGGACCAGCTCGGCATCGAT
BIF_00366 BIF_00366 CP001853.1 TATCGGCATCATGGGCGGCACCTTCGATCCGATTCACAACGGGCATCTGGTGGCGGCCTCCGAAG
BIF_00884 BIF_00884 CP001853.1 GGGCTTGACTTGGATGACCCGTTCATCGCGCTCCGACTCACTGCCGAGCGGTTGAGCCTGGTGCGGTA
BIF_00883 BIF_00883 CP001853.1 CAGCGTGTGCCACTTGGCGTAATCGGCATGATTTACGAGGCACGTCCGAATGTGACCGTCGACGTGGCGG
BIF_00882 BIF_00882 CP001853.1 CGATGAGAAGATCATGATTGTCACCGCTACCTCTGGGGATACCGGCAAGGCGGCGCTTGCCGGATTCGCGGATGC
BIF_00155 BIF_00155 CP001853.1 GCGCGTGAGGCCGTGCAGTGGACCTACATGGGCTACCTCGCCTCCATCAAGAGCCAGGACGGCGC
BIF_01804 BIF_01804 CP001853.1 ACGGTGACCGGTGAAGTGGAGCTCGGCCCACAGTCCCCGATGCAGAACCGTCTCGGACCGTATGCGAC
BIF_00593 BIF_00593 CP001853.1 CAGGAGGGCGGTCCTGTCGCCGATTTTGCCGAGCGGAATATCGATGTGCTCGTGACGATCAATGGTTCGCCGT
BIF_00082 BIF_00082 CP001853.1 GACTCGTCTTCGCGTCCGAGAACGAAGGGGTCATGCATGCCTGCGGCCACGACATCCATATGACATCACTGCTGG
BIF_00052 BIF_00052 CP001853.1 TCGACATTCTGGTGAACATCATCCGCCCGATCCCATTCATCATCTTCCTCGCCGCCATGCAGCCGCTCACC
BIF_00083 BIF_00083 CP001853.1 TCGTGGGCCTCTCCGAGCATGCGAACAGGTATCCGGCACAGCTTTCCGGCGGCCAGAAACAACGTGTG
BIF_00129 BIF_00129 CP001853.1 CACAGGCCCCGCACGCTGCTTGGCCAACGTCTCAACGATGTGGTGGACGAATCATTGGCGGACAG

Total number of rows: 1689

Table truncated, full table size 166 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL10040_BB12ForGEO.gal.gz 33.9 Kb (ftp)(http) GAL

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