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Platform GPL10189 Query DataSets for GPL10189
Status Public on Mar 18, 2010
Title JCVI PFGRC Bacillus anthracis 13K v4 array designed primarily based on strain Ames
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Bacillus anthracis
Manufacturer JCVI PFGRC
Manufacture protocol 4QBA, with arrayer AUSHON, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 5821 oligonucleotides, has 13056 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Mar 16, 2010
Last update date May 20, 2014
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Samples (6) GSM1395022, GSM1395023, GSM1395024, GSM1395025, GSM1395026, GSM1395027
Series (1)
GSE57851 A new Rrf2 repressor family member, SaiR, controls transcription of spxA2 encoding a regulator of the oxidative stress response in Bacillus anthracis.

Data table header descriptions
ID UID; Unique identification of each oligo
Row
Column
OligoID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
ORF primary target link in Entrez Gene
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain A2012 Target map of strain A2012
Strain Ames Target map of strain Ames
SPOT_ID

Data table
ID Row Column OligoID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain ORF Common Name of Primary Target Gene Symbol Strain A2012 Strain Ames SPOT_ID
1 1 1 4QBA00013_P_13 ATCTATCCAAAGCGCAAAAAGGCTAGAGATATACTTTTAATGGACACTTATGACAATGTACTACTGTTAT 32.86 30 78 A2012 BXA0066 hypothetical protein, BXA0066::70::100.0::2.3E-11::+
2 1 2 4QBA00011_L_13 AGTGAAAGGAAAAACGAATGTAATTGGCGTTTTATTACCGCACGTAAATGATCAATATTATAGCGCTATT 32.86 30 81 Ames BA5652 sugar-binding transcriptional regulator, LacI family BA5652::70::100.0::1.7E-11::+
3 1 3 4QBA00009_H_13 GAAATTGACGGTACAAACGTGAAGATTGAGCGCGATGTTGAAGGTGATACAGAAGTGGTTGAAACTTCAT 41.43 29 82 Ames BA4760 electron transfer flavoprotein, beta subunit etfB BA4760::70::100.0::9.4E-12::+
4 1 4 4QBA00017_D_13 AGCTATTTCCACTATCCTTTTTCTTTATTAGAACTCTATTCAAGGTTCTGTTCTGCTCTTTTTTGTAAAT Control At1g05570 At1g05570
5 1 5 4QBA00007_P_1 GGCTGTACATTGGAACGAAAATGGTGAGCCGAATGAGTTTATGAGTAAACAAGTTGTTGTAGCATTTATT 37.14 30 80 Ames BA1305 membrane protein, putative BA1305::70::100.0::4.8E-12::+
6 1 6 4QBA00005_L_1 CTATGCAGTGCAAGATAAGTTTTGGGTAACAGATCCTGATGGGAATGAGTGGGAATTCTTTTATACGAAA 38.57 30 62 Ames BA3198 glyoxalase family protein BA3198::70::100.0::6.6E-12::+
7 1 7 4QBA00003_H_1 AATCTCTGAAGTACTAAAGGTATTGGCGCATCCTGTCCGTTTATCATTAGTAAAAATAATGCTTGCAAAA 34.29 30 84 Ames BA3479 transcriptional regulator, ArsR family BA3479::70::100.0::1.0E-11::+
8 1 8 4QBA00001_D_1 AAATTTCATACTTATCTAAATCAAGTAACAGGAAAAAGTTTGACATATGGTATATGCTCTGCCAGACTGC 32.86 30 85 A2012 BXB0080 hypothetical protein BXB0080::70::100.0::2.1E-11::+
9 1 9 4QBA00013_P_13 ATCTATCCAAAGCGCAAAAAGGCTAGAGATATACTTTTAATGGACACTTATGACAATGTACTACTGTTAT 32.86 30 78 A2012 BXA0066 hypothetical protein, BXA0066::70::100.0::2.3E-11::+
10 1 10 4QBA00011_L_13 AGTGAAAGGAAAAACGAATGTAATTGGCGTTTTATTACCGCACGTAAATGATCAATATTATAGCGCTATT 32.86 30 81 Ames BA5652 sugar-binding transcriptional regulator, LacI family BA5652::70::100.0::1.7E-11::+
11 1 11 4QBA00009_H_13 GAAATTGACGGTACAAACGTGAAGATTGAGCGCGATGTTGAAGGTGATACAGAAGTGGTTGAAACTTCAT 41.43 29 82 Ames BA4760 electron transfer flavoprotein, beta subunit etfB BA4760::70::100.0::9.4E-12::+
12 1 12 4QBA00017_D_13 AGCTATTTCCACTATCCTTTTTCTTTATTAGAACTCTATTCAAGGTTCTGTTCTGCTCTTTTTTGTAAAT Control At1g05570 At1g05570
13 1 13 4QBA00007_P_1 GGCTGTACATTGGAACGAAAATGGTGAGCCGAATGAGTTTATGAGTAAACAAGTTGTTGTAGCATTTATT 37.14 30 80 Ames BA1305 membrane protein, putative BA1305::70::100.0::4.8E-12::+
14 1 14 4QBA00005_L_1 CTATGCAGTGCAAGATAAGTTTTGGGTAACAGATCCTGATGGGAATGAGTGGGAATTCTTTTATACGAAA 38.57 30 62 Ames BA3198 glyoxalase family protein BA3198::70::100.0::6.6E-12::+
15 1 15 4QBA00003_H_1 AATCTCTGAAGTACTAAAGGTATTGGCGCATCCTGTCCGTTTATCATTAGTAAAAATAATGCTTGCAAAA 34.29 30 84 Ames BA3479 transcriptional regulator, ArsR family BA3479::70::100.0::1.0E-11::+
16 1 16 4QBA00001_D_1 AAATTTCATACTTATCTAAATCAAGTAACAGGAAAAAGTTTGACATATGGTATATGCTCTGCCAGACTGC 32.86 30 85 A2012 BXB0080 hypothetical protein BXB0080::70::100.0::2.1E-11::+
17 1 17 4QBA00013_O_13 AAATCAAACTTAAAGTCTTTACAACCGCATACGGTTGCGGTTGCCACAACATTTCTAGCTTCTTTTGCTA 38.57 32 120 Ames BA2991 nucleoside transporter, NupC family BA2991::70::100.0::2.1E-11::+
18 1 18 4QBA00011_K_13 ATGTTAGATGATTACTTACATATTGTAGATACTGCTCGCTGGTTAGCTAACGATGAGCTTAACGTCGTTC 38.57 30 88 Ames BA4923 oxidoreductase, Gfo/Idh/MocA family BA4923::70::100.0::1.5E-11::+
19 1 19 4QBA00009_G_13 AAATAATCGATGAACGTTTATTTCGGTGTCATCAATCATATATCGTGAATACGAAGCAGATGTCTTCTTA 32.86 32 100 Ames BA3008 response regulator BA3008::70::100.0::7.6E-12::+
20 1 20 4QBA00017_C_13 TACTGAAACTGGATCAATGGTAAGCTTTTTTTACTCATATATAATCACAACCTATATCGCTTCTATATCT Control At1g01010 At1g01010

Total number of rows: 13056

Table truncated, full table size 2269 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GPL10189_B_anthracis_4_Ames.ann.txt.gz 438.1 Kb (ftp)(http) TXT

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