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Platform GPL10581 Query DataSets for GPL10581
Status Public on Aug 01, 2010
Title Affymetrix Bacillus anthracis custom array_version 2 [B_anthracis]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bacillus anthracis
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix CDF, PROBE_TAB, and GIN files linked below.
 
Web link http://www.affymetrix.com/analysis/index.affx
Submission date Jun 23, 2010
Last update date Aug 01, 2010
Contact name Paul Sumby
Organization name University of Nevada
Department Microbiology & Immunology
Street address 1554 N. Virginia St.
City Reno
State/province NV
ZIP/Postal code 89557
Country USA
 
Samples (12) GSM559828, GSM559829, GSM559830, GSM559831, GSM559832, GSM559833 
Series (1)
GSE22559 Transcriptome comparison of B. anthracis Ames and isogenic sinR-null mutant, UTA21

Data table header descriptions
ID
Identifier
Identifier Source
Probe Set Name
Description
Group
Sequence Type
chromStart
chromEnd
chromosome
length
species
orientation
ergoId
cog
Representing
Classification 10
ORF Locus tag
SPOT_ID

Data table
ID Identifier Identifier Source Probe Set Name Description Group Sequence Type chromStart chromEnd chromosome length species orientation ergoId cog Representing Classification 10 ORF SPOT_ID
1 J04423.1 GenBank AFFX-BioB-3_at E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Control Sequence Control
2 J04423.1 GenBank AFFX-BioB-5_at E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Control Sequence Control
3 J04423.1 GenBank AFFX-BioB-M_at E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Control Sequence Control
4 J04423.1 GenBank AFFX-BioC-3_at E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Control Sequence Control
5 J04423.1 GenBank AFFX-BioC-5_at E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Control Sequence Control
6 J04423.1 GenBank AFFX-BioDn-3_at E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Control Sequence Control
7 J04423.1 GenBank AFFX-BioDn-5_at E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. Control Sequence Control
8 X03453.1 GenBank AFFX-CreX-3_at Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. Control Sequence Control
9 X03453.1 GenBank AFFX-CreX-5_at Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. Control Sequence Control
10 L38424.1 GenBank AFFX-DapX-3_at B. subtilis GEN=jojG DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. Control Sequence Control
11 L38424.1 GenBank AFFX-DapX-5_at B. subtilis GEN=dapB DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. Control Sequence Control
12 L38424.1 GenBank AFFX-DapX-M_at B. subtilis GEN=dapB, jojF DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. Control Sequence Control
13 X17013.1 GenBank AFFX-LysX-3_at B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). Control Sequence Control
14 X17013.1 GenBank AFFX-LysX-5_at B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). Control Sequence Control
15 X17013.1 GenBank AFFX-LysX-M_at B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). Control Sequence Control
16 M24537.1 GenBank AFFX-PheX-3_at B. subtilis GEN=pheB DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. Control Sequence Control
17 M24537.1 GenBank AFFX-PheX-5_at B. subtilis GEN=pheA DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. Control Sequence Control
18 M24537.1 GenBank AFFX-PheX-M_at B. subtilis GEN=pheA DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. Control Sequence Control
19 X04603.1 GenBank AFFX-ThrX-3_at B. subtilis GEN=thrB DB_XREF=gb:X04603.1 NOTE=SIF corresponding to nucleotides 1689-2151 of gb:X04603.1 DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). Control Sequence Control
20 X04603.1 GenBank AFFX-ThrX-5_at B. subtilis GEN=thrC DB_XREF=gb:X04603.1 NOTE=SIF corresponding to nucleotides 288-932 of gb:X04603.1 DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). Control Sequence Control

Total number of rows: 6332

Table truncated, full table size 1423 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10581_B_Anthracis.cdf.gz 2.9 Mb (ftp)(http) CDF
GPL10581_B_Anthracis.gin.gz 246.4 Kb (ftp)(http) GIN
GPL10581_probe_tab.txt.gz 12.3 Mb (ftp)(http) TXT

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