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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 26, 2011 |
| Title |
Agilent-023309 ISB Pyrococcus 244K 60mer tiling array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Pyrococcus furiosus DSM 3638 |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
60-mer probes were tiled every 16 nt. Plus extras, random control probes, and replicate probes. See manufacturer's web site at http://www.agilent.com/
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| Support |
glass |
| Coating |
other |
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| Description |
Whole genome tiling array for Pyrococcus furiosus DSM 3638
Agilent designID: 023309
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| Web link |
http://www.agilent.com/
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| Contributor(s) |
Yoon S, Bare JC, Reiss DJ, Baliga NS |
| Submission date |
Jan 19, 2011 |
| Last update date |
Jan 20, 2011 |
| Contact name |
Sung Ho Yoon |
| Organization name |
Konkuk University
|
| Department |
Department of Bioscience and Biotechnology
|
| Street address |
120 Neungdong-ro, Gwangjin-gu
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| City |
Seoul |
| ZIP/Postal code |
05029 |
| Country |
South Korea |
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| Samples (14)
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GSM658866, GSM658867, GSM658868, GSM658869, GSM658870, GSM658871
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| Series (2) |
| GSE26778 |
Pyrococcus furiosus DSM 3638 growth curve, tiling arrays |
| GSE26782 |
Parallel evolution of transcriptome structure during genome reorganization |
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| Data table header descriptions |
| ID |
|
| PROBE_ID |
Probe identifier (ex, extra probe; fwd, probe for forward strand; rev, probe for reverse strand; rnd, random control probes; rep, replicate probe) |
| GENOME_ACC |
GenBank Genome Accession |
| ORF |
locus tag |
| CHROMOSOMAL_LOCATION |
Chromosomal Location (start-end) |
| CHROMOSOME |
|
| START |
probe start position on CHROMOSOME |
| END |
probe end position on CHROMOSOME |
| SEQUENCE |
Probe Sequence |
| SPOT_ID |
|
| Data table |
| ID |
PROBE_ID |
GENOME_ACC |
ORF |
CHROMOSOMAL_LOCATION |
CHROMOSOME |
START |
END |
SEQUENCE |
SPOT_ID |
| 1 |
GE_BrightCorner |
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CONTROL |
| 2 |
DarkCorner |
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CONTROL |
| 3 |
DarkCorner |
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CONTROL |
| 4 |
pfu_fwd_107366 |
NC_003413.1 |
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chr1:1717841-1717900 |
chr1 |
1717841 |
1717900 |
CTGTGCAGGAGGAGATTGGGCTCAGAGGAGCGAGGGTCGCGAGCTTTGCTATAGACCCAG |
|
| 5 |
pfu_fwd_110543 |
NC_003413.1 |
PF1917 |
chr1:1768673-1768732 |
chr1 |
1768673 |
1768732 |
GAGCATTGGGGAAAAGCGAGGCATCTCAAAACTACTCTTTACAACTCCCACCACTGGAGC |
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| 6 |
pfu_rev_058838 |
NC_003413.1 |
|
chr1:941401-941460 |
chr1 |
941401 |
941460 |
AGTGGAAAAACCAATAGATATAGCGAAAGTGAAGAGAGTTGGAGCCGTGGACGTCTCTTA |
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| 7 |
pfu_fwd_038502 |
NC_003413.1 |
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chr1:616017-616076 |
chr1 |
616017 |
616076 |
ATCTTCTCTGTCTTCAAGACTATACAGCCGAAGAAATCTGGACAATTCTTGAAACAGCAA |
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| 8 |
pfu_fwd_063189 |
NC_003413.1 |
PF1056 |
chr1:1011009-1011068 |
chr1 |
1011009 |
1011068 |
CTATCGGTTTCTCATAAGAGGGGAGCTTATAGTCTCTCAATGGATCAAAGCTGTCAAATG |
|
| 9 |
pfu_fwd_044198 |
NC_003413.1 |
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chr1:707153-707212 |
chr1 |
707153 |
707212 |
CTAACTACCTCAGAAGCAACCTCAAGCTCCGTCTTTCCGGGCCTTATCTCCCCTTCCGCG |
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| 10 |
pfu_fwd_069138 |
NC_003413.1 |
PF1157 |
chr1:1106193-1106252 |
chr1 |
1106193 |
1106252 |
AAAGAAAGTACTATGCTCATGAAGATATTTTTTGTAACCATTTTGTCTCTTAAAGAAGGC |
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| 11 |
pfu_fwd_036794 |
NC_003413.1 |
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chr1:588689-588748 |
chr1 |
588689 |
588748 |
GGATGGAGAAAAGCAAAGCTCCAGATAACAAGAGCATTCCCCCTGGGAACTGAGTCATCT |
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| 12 |
pfu_rev_067456 |
NC_003413.1 |
PF1129 |
chr1:1079289-1079348 |
chr1 |
1079289 |
1079348 |
GCTATCCTTTTCACTTCTATCCACTTTTACTACTCCATTTTCAACTGCCCAATCAACAGC |
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| 13 |
pfu_rev_113708 |
NC_003413.1 |
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chr1:1819321-1819380 |
chr1 |
1819321 |
1819380 |
AGAGAGTCGCAGTTGCCAGGGCCATAGTTGTAGAGCCAGATGTATTGCTTATGGATGAGC |
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| 14 |
pfu_rev_108733 |
NC_003413.1 |
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chr1:1739721-1739780 |
chr1 |
1739721 |
1739780 |
AAGGAAAATTACCTAAAGCTCGCAAGACACCTTCACCTTTCTTCAAACCCTCTTCCACTT |
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| 15 |
pfu_fwd_083501 |
NC_003413.1 |
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chr1:1336001-1336060 |
chr1 |
1336001 |
1336060 |
AATCCCAGGTCCAAAGGCGAGAGAAATAATAGAGAAACACCACAAATACATGGCAACTAC |
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| 16 |
pfu_fwd_052085 |
NC_003413.1 |
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chr1:833345-833404 |
chr1 |
833345 |
833404 |
GTTCTTAACCTTAGAGCTGTTTGAAATGGAAGTTAAGAATATCATCCTAGTCTTGAACAA |
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| 17 |
pfu_fwd_105619 |
NC_003413.1 |
PF1832 |
chr1:1689889-1689948 |
chr1 |
1689889 |
1689948 |
TTTCTTTTCTATTCTTCTTATGATACATAGGGCAAGATCTTCAAGTGAAGTGTGAACTTT |
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| 18 |
pfu_fwd_034911 |
NC_003413.1 |
PF0539,PF0538.1n |
chr1:558561-558620 |
chr1 |
558561 |
558620 |
GGGAACAGTTTCATTTCCTCGATTAGGGCTCCGTAAGCGTGTTTGTAAACTCCTCCGAAG |
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| 19 |
pfu_rev_032652 |
NC_003413.1 |
PF0503 |
chr1:522425-522484 |
chr1 |
522425 |
522484 |
GATAAAGGAGGTAAGATGTTATGGCATGTGAGAAGAACCCAAATGCAATTCCCGCAAGGA |
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| 20 |
pfu_rev_037090 |
NC_003413.1 |
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chr1:593433-593492 |
chr1 |
593433 |
593492 |
AAAGTTCAGGAGGGGACTGAGTGATGCTGAGATAATTAAGTTGGCCGAGAAGGGAAGAGG |
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Total number of rows: 243504
Table truncated, full table size 32855 Kbytes.
| Supplementary data files not provided |
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