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Platform GPL13959 Query DataSets for GPL13959
Status Public on Dec 01, 2011
Title Agilent-028745 PFreudenreichii15K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Propionibacterium freudenreichii
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description PFreudenreichii 15K Thierry

Arrays of this design have barcodes that begin with 16028745 or 2528745.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 21, 2011
Last update date Dec 01, 2011
Contact name Marion Dalmasso
E-mail(s) marion.dalmasso@teagasc.ie
Organization name Teagasc
Department Food Safety
Lab Kieran Jordan Lab
Street address Moorepark
City Fermoy
ZIP/Postal code Co. Cork
Country Ireland
 
Samples (55) GSM765330, GSM765331, GSM765332, GSM765333, GSM765334, GSM765335 
Series (2)
GSE30841 Propionibacterium freudenreichii transcriptomic response during cold storage
GSE34227 Transcriptomic response of 6 Propionibacterium freudenreichii strains during cold storage

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GENOME_ACC
GENE_NAME Gene Name
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
LOCUS_TAG
ORF ORF Name

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GENOME_ACC GENE_NAME CHROMOSOMAL_LOCATION SEQUENCE LOCUS_TAG ORF
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 PFrdii_00093696 PFrdii_00093696 FALSE FN806773 rnc unmapped GAAGTTCGTCCACCACATCTTCGATCCACTGGTCGACCGGGCCGTGAAGATG PFREUD_14460 PFREUD_14460
5 96 156 PFrdii_00033539 PFrdii_00033539 FALSE FN806773 unmapped CACCGACGTCGAACAATTGCTGCCCACCTACCTGCCCGAAGTGCAG PFREUD_05090 PFREUD_05090
6 96 154 PFrdii_00077495 PFrdii_00077495 FALSE FN806773 hisB unmapped CATCCATCGCGTCACCTCCGAATCCGATGTGAGCGTCGAGCTTGACCTC PFREUD_11770 PFREUD_11770
7 96 152 PFrdii_00213579 PFrdii_00213579 FALSE FN806773 unmapped GCAAGCTTCAGAACTACCGATCAGGCCGCCAAGTCATTGACTTGGCG intergen.424
8 96 150 PFrdii_00185583 PFrdii_00185583 FALSE FN806773 unmapped GGCGACCCCGGTGCCGTCAAGGAACGCATGGAGACGAAGGGACATC intergen.1197
9 96 148 PFrdii_00037951 PFrdii_00037951 FALSE FN806773 rpsH unmapped CATCAGCAAGCCCGGTCTGCGTGTCTACGCCAAGTCGAATCAGCT PFREUD_05850 PFREUD_05850
10 96 146 PFrdii_00099686 PFrdii_00099686 FALSE FN806773 dskA unmapped CAAGACAGCGTCCGTAACCACAGTCGACCTGCCAGTCCTCGAGGGTGAGAAG PFREUD_15420 PFREUD_15420
11 96 144 PFrdii_00162350 PFrdii_00162350 FALSE FN806773 slh2 unmapped GTTGCTCGTGACGCCATGGCCGCCTTCCTCTACCGTCAGGCCGGTAG PFREUD_23030 PFREUD_23030
12 96 142 PFrdii_00210166 PFrdii_00210166 FALSE FN806773 unmapped CGGTGCCCGGCAGGCGTGGACAGCGACGAATATGCGTCTGACAAG intergen.269
13 96 140 PFrdii_00085479 PFrdii_00085479 FALSE FN806773 glpB unmapped GACCCTGGAACTGGATTCCTACCAGAAGCTGTCGGAAACGATCCTCGGACTTC PFREUD_12980 PFREUD_12980
14 96 138 PFrdii_00201511 PFrdii_00201511 FALSE FN806773 unmapped GATTGCTCCTCTAGTCGCGGACCGGGTCGCTACCGTGCTGCACAGAC intergen.806
15 96 136 PFrdii_00216178 PFrdii_00216178 FALSE FN806773 unmapped CAGGATGGCACAAGAGGGCCACGAGGTCCTGAGCGGAAGAGGGGAATC intergen.615
16 96 134 PFrdii_00054444 PFrdii_00054444 FALSE FN806773 ndk unmapped GATGCAACTGCGTCATGTGGATGCCGACTTGGCCGCCAAGCACTATGCGGAACATGTC PFREUD_08360 PFREUD_08360
17 96 132 PFrdii_00051401 PFrdii_00051401 FALSE FN806773 PPA1638 unmapped CTGTTCGCCGTGTTGGTGGTGGGGGCCGGCTGGATGATCATCAAC PFREUD_07940 PFREUD_07940
18 96 130 PFrdii_00183919 PFrdii_00183919 FALSE FN806773 unmapped GAAACGCACGAGGGGGACCGCACGGCCGTGCGGTCCCCCTCGTGCGTTCTGTTCGAG intergen.1069
19 96 128 PFrdii_00089760 PFrdii_00089760 FALSE FN806773 unmapped GCTGGAACAGGCACGGGTGAGGCTGCGTGGCGAATACCGGATCAGC PFREUD_13610 PFREUD_13610
20 96 126 PFrdii_00009220 PFrdii_00009220 FALSE FN806773 unmapped GCAGGGCGTGTGGTTCCTCAATTCGGTGCAGGGCATCTCGCCGGTC PFREUD_01310 PFREUD_01310

Total number of rows: 15744

Table truncated, full table size 2124 Kbytes.




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Supplementary data files not provided
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