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Status
Public on May 03, 2013
Title
Agilent-029364 ISB Mmp 60K 60mer tiling array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Methanococcus maripaludis S2 Manufacturer
Agilent Technologies
Manufacture protocol
60 bp were tiled every 60 bps. Plus 3 extras per annotated ORF and 9 extras per unannotated transcripts from our previous publication (PMID: 21750103). See manufacturer's web site at http://www.agilent.com/
Support
glass
Coating
other
Description
Whole genome tiling expression array for Methanococcus maripaludis S2
Web link
http://www.agilent.com/ Contributor(s)
Yoon S , Baliga NS Submission date
Dec 27, 2011
Last update date
May 03, 2013
Contact name
Sung Ho Yoon
Organization name
Konkuk University
Department
Department of Bioscience and Biotechnology
Street address
120 Neungdong-ro, Gwangjin-gu
City
Seoul
ZIP/Postal code
05029
Country
South Korea
Samples (272)
GSM1032681 , GSM1032682 , GSM1032683 , GSM1032684 , GSM1032685 , GSM1032686
GSM1032687 ,
GSM1032688 ,
GSM1032723 ,
GSM1032724 ,
GSM1032725 ,
GSM1032726 ,
GSM1032793 ,
GSM1032795 ,
GSM1032797 ,
GSM1032799 ,
GSM1032801 ,
GSM1032802 ,
GSM1032803 ,
GSM1032804 ,
GSM1032814 ,
GSM1032815 ,
GSM1032816 ,
GSM1032817 ,
GSM1032818 ,
GSM1032819 ,
GSM1032820 ,
GSM1032821 ,
GSM1032822 ,
GSM1032823 ,
GSM1032824 ,
GSM1032825 ,
GSM1032826 ,
GSM1032827 ,
GSM1032828 ,
GSM1032829 ,
GSM1032830 ,
GSM1032831 ,
GSM1032832 ,
GSM1032833 ,
GSM1032849 ,
GSM1032850 ,
GSM1032851 ,
GSM1032852 ,
GSM1032853 ,
GSM1032854 ,
GSM1032855 ,
GSM1032856 ,
GSM1032857 ,
GSM1032858 ,
GSM1032859 ,
GSM1032860 ,
GSM1032861 ,
GSM1032862 ,
GSM1032863 ,
GSM1032864 ,
GSM1032865 ,
GSM1032866 ,
GSM1032867 ,
GSM1032868 ,
GSM1032869 ,
GSM1032870 ,
GSM1032871 ,
GSM1032872 ,
GSM1032873 ,
GSM1032874 ,
GSM1032875 ,
GSM1032876 ,
GSM1032877 ,
GSM1032878 ,
GSM1032879 ,
GSM1032880 ,
GSM1033059 ,
GSM1033060 ,
GSM1033061 ,
GSM1033062 ,
GSM1033063 ,
GSM1033064 ,
GSM1033065 ,
GSM1033066 ,
GSM1033067 ,
GSM1033068 ,
GSM1033069 ,
GSM1033070 ,
GSM1033071 ,
GSM1033072 ,
GSM1033073 ,
GSM1033074 ,
GSM1033075 ,
GSM1033076 ,
GSM1033077 ,
GSM1033078 ,
GSM1033079 ,
GSM1033080 ,
GSM1033081 ,
GSM1033082 ,
GSM1033083 ,
GSM1033084 ,
GSM1033085 ,
GSM1033086 ,
GSM1033087 ,
GSM1033088 ,
GSM1033089 ,
GSM1033090 ,
GSM1033479 ,
GSM1033480 ,
GSM1033481 ,
GSM1033482 ,
GSM1033483 ,
GSM1033484 ,
GSM1033485 ,
GSM1033486 ,
GSM1033487 ,
GSM1033488 ,
GSM1033489 ,
GSM1033490 ,
GSM1033491 ,
GSM1033492 ,
GSM1033493 ,
GSM1033494 ,
GSM1033495 ,
GSM1033496 ,
GSM1033497 ,
GSM1033498 ,
GSM1033499 ,
GSM1033500 ,
GSM1033501 ,
GSM1033502 ,
GSM1033503 ,
GSM1033504 ,
GSM1033505 ,
GSM1033506 ,
GSM1033507 ,
GSM1033508 ,
GSM1033509 ,
GSM1033510 ,
GSM1033714 ,
GSM1033715 ,
GSM1033716 ,
GSM1033717 ,
GSM1033718 ,
GSM1033719 ,
GSM1033720 ,
GSM1033721 ,
GSM1033722 ,
GSM1033723 ,
GSM1033724 ,
GSM1033725 ,
GSM1033726 ,
GSM1033727 ,
GSM1033728 ,
GSM1033729 ,
GSM1033730 ,
GSM1033731 ,
GSM1033732 ,
GSM1033733 ,
GSM1033765 ,
GSM1033766 ,
GSM1033767 ,
GSM1033768 ,
GSM1033769 ,
GSM1033770 ,
GSM1033771 ,
GSM1033772 ,
GSM1033773 ,
GSM1033774 ,
GSM1033775 ,
GSM1033776 ,
GSM1033777 ,
GSM1033778 ,
GSM1033779 ,
GSM1033780 ,
GSM1033781 ,
GSM1033782 ,
GSM1033783 ,
GSM1033784 ,
GSM1033898 ,
GSM1033899 ,
GSM1033900 ,
GSM1033901 ,
GSM1033902 ,
GSM1033903 ,
GSM1033904 ,
GSM1033905 ,
GSM1033906 ,
GSM1033907 ,
GSM1033908 ,
GSM1033909 ,
GSM1033910 ,
GSM1033911 ,
GSM1033912 ,
GSM1033913 ,
GSM1033914 ,
GSM1033915 ,
GSM1033916 ,
GSM1033917 ,
GSM1033918 ,
GSM1033919 ,
GSM1033920 ,
GSM1033921 ,
GSM1033922 ,
GSM1033923 ,
GSM1033924 ,
GSM1033925 ,
GSM1033926 ,
GSM1033927 ,
GSM1033928 ,
GSM1033929 ,
GSM1033930 ,
GSM1033931 ,
GSM1033932 ,
GSM1033933 ,
GSM1033934 ,
GSM1033935 ,
GSM1033936 ,
GSM1033937 ,
GSM1033938 ,
GSM1033939 ,
GSM1033940 ,
GSM1033941 ,
GSM1033942 ,
GSM1033943 ,
GSM1033944 ,
GSM1033945 ,
GSM1033946 ,
GSM1033947 ,
GSM1033948 ,
GSM1033949 ,
GSM1033950 ,
GSM1033951 ,
GSM1033952 ,
GSM1033953 ,
GSM1033954 ,
GSM1033955 ,
GSM1033956 ,
GSM1033957 ,
GSM1033958 ,
GSM1033959 ,
GSM1033960 ,
GSM1033961 ,
GSM1033962 ,
GSM1033963 ,
GSM1033964 ,
GSM1033965 ,
GSM1033966 ,
GSM1033967 ,
GSM1033968 ,
GSM1033969 ,
GSM1033970 ,
GSM1033971 ,
GSM1033972 ,
GSM1033973 ,
GSM1033974 ,
GSM1033975 ,
GSM1033976 ,
GSM1033977 ,
GSM1033978 ,
GSM1033979 ,
GSM1033980 ,
GSM1033981 ,
GSM1033982 ,
GSM1033983 ,
GSM1033984 ,
GSM1033985 ,
GSM1033986 ,
GSM1033987 ,
GSM1033988 ,
GSM1033989 ,
GSM1033990 ,
GSM1033991 ,
GSM1033992 ,
GSM1033993 Series (15)
GSE42111 Steady-state samples of Methanococcus maripaludis MM901 grown on formate under hydrogen limited conditions
GSE42115 Steady-state samples of Methanococcus maripaludis MM901 grown on formate-excess medium
GSE42121 Steady-state samples of Methanococcus maripaludis MM901:del_frcA (MMP0820)
GSE42122 Steady-state samples of Methanococcus maripaludis MM901:del_fruA (MMP1382)-del_frcA (MMP0820)
GSE42123 Steady-state samples of Methanococcus maripaludis MM901:del_mtd (MMP0372)
GSE42124 Steady-state samples of Methanococcus maripaludis MM901 grown on N14 or N15
GSE42126 Time series of Methanococcus maripaludis MM901, a shift from a H2-excess and N-limiting condition to a H2-limited and N-excess condition in chemostats (growth rate held constant)
GSE42130 Time series of Methanococcus maripaludis MM901, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)
GSE42143 Time series of Methanococcus maripaludis MM901, a shift from a H2-excess condition to a H2-limiting condition
GSE42159 Time series of Methanococcus maripaludis MM901:del_MMP0719, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)
GSE42162 Time series of Methanococcus maripaludis MM901:del_MMP1100, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)
GSE42164 Time series of Methanococcus maripaludis MM901:del_MMP1447, a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)
GSE42165 Time series of Methanococcus maripaludis MM901:del_fruA (MMP1382)-del_frcA (MMP0820), a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)
GSE42166 Time series of Methanococcus maripaludis MM901:del_mtd (MMP0372), a shift from a H2-excess and P-limiting condition to a H2-limited and P-excess condition in chemostats (growth rate held constant)
GSE42167 Time series of Methanococcus maripaludis MM901, a shift from a H2-limited condition to a H2-excess condition
Data table header descriptions ID PROBE_ID Probe identifier (ex, extra probe; fwd, probe for forward strand; rev, probe for reverse strand; rnd, random control probes; rep, replicate probe)
GB_ACC GenBank Genome Accession
ORF Locus in which the probe is spanned
CHROMOSOMAL_LOCATION Chromosomal Location (start-end)
SEQUENCE Probe Sequence
GB_RANGE SPOT_ID
Data table ID PROBE_ID GB_ACC ORF CHROMOSOMAL_LOCATION SEQUENCE GB_RANGE SPOT_ID 1
GE_BrightCorner
--GE_BrightCorner
2
DarkCorner
--DarkCorner
3
DarkCorner
--DarkCorner
4
mm_v2_rev_001302
NC_005791
chr1:78091-78150
GGTACAGCAGGTATTTTAGGAGGTATCTTAACAGGTGTCTTTGGAATGGCTGCTCTTGGT
NC_005791[78091..78150]
5
mm_v2_fwd_016133
NC_005791
chr1:967921-967980
TGGAGTGGAAGTGACAAAAACCGTTGGAGATGCAAGGGAGGAGTTAAAAAAAGAAGTTAA
NC_005791[967921..967980]
6
mm_v2_rev_017126
NC_005791
chr1:1027531-1027590
GATCCTTGAAAAAATATCAGTAATGGATCCAAAGATTATCGACGATTTCGTAATAGATCT
NC_005791[1027531..1027590]
7
mm_v2_fwd_010511
NC_005791
MMP0638 chr1:630601-630660
ATCTGCGGGAACCATATTAAAGTCTCCAGTATAACTTATTCCAAAATCGTCTTTTGGATT
NC_005791[630601..630660]
8
mm_v2_rev_024817
NC_005791
MMP1530 chr1:1488991-1489050
TTATCTTTTCCTTAATTTTTGCTAATTCTTCACTGCTTAATTCTTCATCAATTTCCTTGT
NC_005791[1488991..1489050]
9
mm_v2_ex_rev_MMP1172_1
NC_005791
MMP1172 chr1:1155749-1155808
AACCAGTTCATCTACATTAATGCCAGAATTTTCTACCATTTCACGAGATACTTTTGCCAT
NC_005791[1155749..1155808]
10
mm_v2_fwd_004430
NC_005791
MMP0264 chr1:265741-265800
TTTAAGAAGAAATCAAACCCGAAATCCCTTACAAAGTATTCAACTCTTAAATCAAGTGAA
NC_005791[265741..265800]
11
mm_v2_fwd_007049
NC_005791
MMP0420 chr1:422881-422940
GTAGCCTCTTGCACCCATTAACACAATTATCTCTTCTGCAAGTTCTTCAACTTTTTTAGG
NC_005791[422881..422940]
12
mm_v2_rev_016148
NC_005791
MMP0983 chr1:968851-968910
ATCAAACCAGTTAATTCCACCGCACAAAGCTGGCCTATCAGGTGTGATTATACAAACGTG
NC_005791[968851..968910]
13
mm_v2_rev_010243
NC_005791
chr1:614551-614610
AAAATTGCGATAATGCTCCAAAGAACATTTGCACTTTACGGTGAAAAAACTGTTGCAGAA
NC_005791[614551..614610]
14
mm_v2_rev_004857
NC_005791
chr1:291391-291450
TTCGATTACTGGAAAAGCTAAAAAAGTAGCAAAAGAAGAAGAAAAAATCGAAGACGTTGA
NC_005791[291391..291450]
15
mm_v2_fwd_002208
NC_005791
chr1:132421-132480
ATTTAGATTCTGCAATGGAACTTCGTGAACTTGTTATTAATAAGATTAACAATCAAAAAT
NC_005791[132421..132480]
16
mm_v2_rev_010714
NC_005791
chr1:642811-642870
ATGGTTTACCAGTGGCAGAACCTTTATTATGGAAAAAGACAGTGTGCGGTACACCTTGGG
NC_005791[642811..642870]
17
mm_v2_fwd_005856
NC_005791
chr1:351301-351360
TTCATATATTGTAAACGCTGCTTCTTGGCTATATCAAAAAGAACCCCAAAACAGAATATA
NC_005791[351301..351360]
18
mm_v2_rev_018551
NC_005791
MMP1123 chr1:1113031-1113090
CCCCTCTTGCAAGAACGGTCTGTGCAACCATAGAATTAAATTTTTCAAAATCAACACTAA
NC_005791[1113031..1113090]
19
mm_v2_rev_017362
NC_005791
chr1:1041691-1041750
GCGTTAAAATTAGCATTTAGAAAAGAAACTTCAAATGTACTTATCGGAGAAGGCCTAATG
NC_005791[1041691..1041750]
20
mm_v2_rev_001632
NC_005791
MMP0087 chr1:97891-97950
CATCCGAGTATTTCGAGACATTCCCTCTGAGTTTCAACTCTTGTTCCACCGCCGATTGTT
NC_005791[97891..97950]
62976 8845 Kbytes .Supplementary data files not provided
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