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Platform GPL15934 Query DataSets for GPL15934
Status Public on Aug 15, 2012
Title Agilent-026636 Prueba Lp IFI 021109
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Lactiplantibacillus plantarum WCFS1
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Genoma Total Lp WCFS1

Arrays of this design have barcodes that begin with 16026636 or 2526636.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Aug 14, 2012
Last update date Aug 15, 2012
Contact name GEO admin
E-mail(s) geo@ncbi.nlm.nih.gov
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (12) GSM986042, GSM986043, GSM986044, GSM1372763, GSM1372764, GSM1372765 
Series (4)
GSE40126 Transcriptional profile Lactobacillus plantarum WCFS1 : p-coumaric acid (p-CA) treated cells
GSE56997 Transcriptional profile Lactobacillus plantarum WCFS1: 15 mM gallic acid (GA) treated cells
GSE63728 Transcriptional profile Lactobacillus plantarum WCFS1 : 1.5mM gallic acid (GA) treated cells

Data table header descriptions
ID
COL
ROW
NAME
ORF
CONTROL_TYPE
CHROMOSOMAL_LOCATION
SEQUENCE
SPOT_ID
SPOT_ID
ORDER

Data table
ID COL ROW NAME ORF CONTROL_TYPE CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID SPOT_ID ORDER
1 96 164 GE_BrightCorner pos CONTROL 1
2 96 162 DarkCorner pos CONTROL 2
3 96 160 DarkCorner pos CONTROL 3
4 96 158 AG1lp_0272#3 lp_0272 FALSE unmapped CCAAGCGGATTCAGCGTTATCTAGCTGGAAGCTGTACAATTACTGCGGGAATTCATGTCA 4
5 96 156 AG1lp_0081#1 lp_0081 FALSE unmapped GAAGATTCTGACTTCATTAATCGGGCCCTTAAGAACACGCTCAAGCCTAGTCAGGTCGAT 5
6 96 154 AG1lp_2759#2 lp_2759 FALSE unmapped TAACTTCTGAGAAGACGATTTCTCCGCGAACTGAAGCAGTTCTCAAACAGCTGCATTCGG 6
7 96 152 AG3lp_0670#3 lp_0670 FALSE unmapped ACGGATATTGGTACAAGCTCCAAGATTGATAATGATAATTCCATTAAACCGCAATTTGGA 7
8 96 150 AG1lp_3271#2 lp_3271 FALSE unmapped TTCCGAACAAGTGTGTCATTAATAGTCGTTCGGAAGCCGATACGACCGTAGAATTGGGTG 8
9 96 148 AG1lp_1763#2 lp_1763 FALSE unmapped GAACGATGGTCAGCGGGTACGCATAAGATTCGCTTGGTTGACATAAAAGATTGGCTACAA 9
10 96 146 AG3lp_2011#1 lp_2011 FALSE unmapped GGTCGATAACCGAGGACATCGTAAACCCGAATCAGAATTAACCGATTTGGACAAAGCCAA 10
11 96 144 AG1lp_1102#1 lp_1102 FALSE unmapped TTGGTGGGCCTGATCATTTGGTTAAGTAGTCCTATCAAACCAGCCAGTGTTTCGATGAAC 11
12 96 142 AG1lp_1296#3 lp_1296 FALSE unmapped AAGTTGAAGCAACTGGATTACCACACACCTTTATCGACAGTTTCTACGACCAACCGACCT 12
13 96 140 AG1lp_3133#3 lp_3133 FALSE unmapped GGAAGAATGATGAGGAGATTAGTTCTGCAAGCGATACTGGCGAAGCAACGACAACTGTAG 13
14 96 138 AG3lp_3479#2 lp_3479 FALSE unmapped AAAGGCGCTAATGCGGAAAAATATCGCTGTGATTCAGTGGTACTCTAAGATTCAAGAACA 14
15 96 136 AG1lp_2630#1 lp_2630 FALSE unmapped TACTGGAACGCGGCTGTCTAATGTTACTGTCAGAACCACTACTTTTAGGCGATTTAGGCT 15
16 96 134 AG1lp_0706#2 lp_0706 FALSE unmapped GTGGATAAGCGTGATTTATACGATAGTTTCGGTGAGATGGAACAACAGATGCAACAAATG 16
17 96 132 AG3lp_3110#1 lp_3110 FALSE unmapped AATGCGGACGATCGTCAAGGATTGGCTTTAAATCCGGAAGATATTGCTAACGCGGTATTA 17
18 96 130 AG1lp_1539#3 lp_1539 FALSE unmapped CACCCAACAGTCGACGCAAAATAAGGCGACAAGCCAATCAACTAGCAGCCAAAGTAATTC 18
19 96 128 AG1lp_2453#2 lp_2453 FALSE unmapped CCGTCCTCTTCCCCGTCCAGCCCTCCCACTCATAAACAAAAATGGTTATCAGACTATTTC 19
20 96 126 AG1lp_1803#1 lp_1803 FALSE unmapped CGCATCTGTTAGTGACCCAACGTCGTTTACGGCTTTTAATGATCTTTGACGCGCTCTTTT 20

Total number of rows: 15744

Table truncated, full table size 1743 Kbytes.




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Supplementary data files not provided

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