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Platform GPL17178 Query DataSets for GPL17178
Status Public on May 21, 2013
Title Agilent-021886 Lactobacillus delbrueckii subsp. bulgaricus 2038 array (probe version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Lactobacillus delbrueckii subsp. bulgaricus 2038
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16021886 or 2521886.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 20, 2013
Last update date May 21, 2013
Contact name Zhidong zhu
E-mail(s) zhidong_zhu@shbiochip.com
Phone 8621-51320288
Organization name shanghai biochip Co.
Street address 151# Libing road
City Shanghai
State/province Shanghai
ZIP/Postal code 201203
Country China
 
Samples (12) GSM1144795, GSM1144796, GSM1144797, GSM1144798, GSM1144799, GSM1144800 
Series (1)
GSE47103 The gene expression characteristics involved in amino acids formation of Lactobacillus delbrueckii subsp. bulgaricus 2038

Data table header descriptions
ID Agilent feature number
SPOT_ID
CONTROL_TYPE
ACCESSION_STRING
ORF
CHROMOSOMAL_LOCATION
SEQUENCE

Data table
ID SPOT_ID CONTROL_TYPE ACCESSION_STRING ORF CHROMOSOMAL_LOCATION SEQUENCE
(+)E1A_r60_1 CONTROL pos
(+)E1A_r60_3 CONTROL pos
(+)E1A_r60_a104 CONTROL pos
(+)E1A_r60_a107 CONTROL pos
(+)E1A_r60_a135 CONTROL pos
(+)E1A_r60_a20 CONTROL pos
(+)E1A_r60_a22 CONTROL pos
(+)E1A_r60_a97 CONTROL pos
(+)E1A_r60_n11 CONTROL pos
(+)E1A_r60_n9 CONTROL pos
(+)eQC-39 CONTROL pos
(+)eQC-40 CONTROL pos
(+)eQC-41 CONTROL pos
(+)eQC-42 CONTROL pos
(-)3xSLv1 CONTROL neg
CUST_1000_PI401358124 FALSE LBU0247 LBU_0247 unmapped GGAAGATATCGCCGGACTTGCCGCCGCAGTCAAAAAGGTTTATACTGCTTTTTAAAATAT
CUST_1001_PI401358124 FALSE LBU0246 LBU_0246 unmapped AGCCTGGTCTTCATGATTTTGATTTTCCTCTCCAATTTCTTCTCGGTCAAGATTTTCGCG
CUST_1002_PI401358124 FALSE LBU0245 LBU_0245 unmapped TTTTGGCTTTTGGCAAAGAGCATGGGGAATTTATCAGAAGCGATATTGAGGAGCTCTTAG
CUST_1003_PI401358124 FALSE LBU0244 LBU_0244 unmapped CGCTGGCTCTTGATGAAGCACATGTACCACAACTACTACAAGGATTACCAGAAGTACTTC
CUST_1004_PI401358124 FALSE LBU0243 LBU_0243 unmapped CAGACCACTTTATTACGATTGACCGCCTGCGTCCGATCTATATTATTGAGAACCAAGGTG

Total number of rows: 1870

Table truncated, full table size 205 Kbytes.




Download family Format
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Supplementary data files not provided
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