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Platform GPL20099 Query DataSets for GPL20099
Status Public on Apr 24, 2015
Title Agilent Custom Lactobacillus Gene Expression 8x15k Array (AMADID: 067475) design
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Lactiplantibacillus plantarum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
 
Contributor(s) Filannino P, Di Cagno R, De Angelis M, Gobbetti M
Submission date Apr 23, 2015
Last update date Apr 24, 2015
Contact name pasquale filannino
E-mail(s) pasquale.filannino1@uniba.it
Organization name Università degli Studi di Bari “Aldo Moro”
Department Dipartimento di Scienze del Suolo
Lab della Pianta e degli Alimenti - Di.S.S.P.A
Street address Via Amendola, 165/A
City BARI
ZIP/Postal code 70126
Country Italy
 
Samples (8) GSM1665357, GSM1665358, GSM1665359, GSM1665360, GSM1665361, GSM1665362 
Series (1)
GSE68188 From transcriptomics to phenomics to reveal adaptation response of Lactobacillus plantarum C2 in plant substrates

Data table header descriptions
ID Probe Name
ORF Locus tag (http://genome.microbedb.jp/lab)
Description Probe Description
SEQUENCE oligonucleotide probe sequence

Data table
ID ORF Description SEQUENCE
CUST_lp_1179_1001 lp_1179 Target: lp_1179; Loc: 1076392-1077819; Strand: +; GeneSymb: cps1C; Descrption: oligosaccharide transporter (flippase) GGAATTGTCATGTTACCTCATATGGCTAACCTGCACGCCAAAGGGAAAAATGAAACGATA
CUST_lp_3018_26072 lp_3018 Target: lp_3018; Loc: 2685046-2685939; Strand: -; GeneSymb: -; Descrption: ABC transporter substrate-binding protein CAGTGTTGAATGTGACTGAAACCATGCCAGCTAAGTTGACTTATCAACAGTGGATGTTGG
CUST_lp_3409_22411 lp_3409 Target: lp_3409; Loc: 3022582-3023154; Strand: -; GeneSymb: -; Descrption: TetR family transcriptional regulator CAGCAATGATGATTCAATTTTGGCAGCGTGGTTATTATCAAACGACAGTTGACGACTTGC
CUST_lp_3494_19442 lp_3494 Target: lp_3494; Loc: 3107472-3108356; Strand: -; GeneSymb: aroD2; Descrption: shikimate 5-dehydrogenase GCGTGGCTCCAATATTTCAATGCCAAACAAGCAAAAAGTGATTCCATTGCTTGATAAGCT
CUST_lp_0665_21721 lp_0665 Target: lp_0665; Loc: 612991-614061; Strand: +; GeneSymb: -; Descrption: prophage P1 protein 42, major capsid protein GTAACTAGTGCTGATGCTATCGTACCGTCAACAACGGCTGATCCACAAACTGGTAAATAG
CUST_lp_0633_24203 lp_0633 Target: lp_0633; Loc: 596264-596578; Strand: -; GeneSymb: -; Descrption: prophage P1 protein 10 AACGTACATGACTTTGTTTGGGGTATTCGCACTGCGCCAATTAATGATCGTCCTAAAAAA
CUST_lp_0116_1391 lp_0116 Target: lp_0116; Loc: 101717-102916; Strand: +; GeneSymb: thiP; Descrption: hydroxymethylpyrimidine permease TTGCCATGACGTATTATCAGAACTTCCTGTATTTGATTGGTTCGGTCTTCACACCGCTAT
CUST_lp_3102_7252 lp_3102 Target: lp_3102; Loc: 2763169-2763768; Strand: +; GeneSymb: -; Descrption: TetR family transcriptional regulator CACTTGGTTTCACCACCTAGATCAACAAGCAAATCCAGAAGTTAAGGACTTGCTCAATGC
CUST_lp_2563_15421 lp_2563 Target: lp_2563; Loc: 2282845-2283681; Strand: -; GeneSymb: hisK; Descrption: histidinol phosphatase GAAGACCAAATATGCCGGGCAAATCGAGATCTCAGTGGGTTTTGAAGTTGATTTCTTACC
CUST_Xhyb_lp_tRNA07_28472 lp_tRNA07 Target: lp_tRNA07; Loc: 511350-511421; Strand: +; GeneSymb: -; Descrption: Gln tRNA GCTATAGCCAAGTGGTAAGGCAACGGGTTTTGATCCCGTGATGCGCTGGTTCGAACCCAG
CUST_lp_3293_10923 lp_3293 Target: lp_3293; Loc: 2930410-2930937; Strand: -; GeneSymb: tag3; Descrption: DNA-3-methyladenine glycosylase I TGATGTTGACTCCCAAAGTGATGCACAATGGTCGTAAGTTACGTGCAATCATTCAAGATG
CUST_lp_1173_5071 lp_1173 Target: lp_1173; Loc: 1069688-1070806; Strand: +; GeneSymb: -; Descrption: UDP-N-acetylglucosamine 2-epimerase GTACTGACGAAGTTAGATGCAATTATGGATACAGTCAAGCCTGATATCGTGCTGGTGCAT
CUST_lp_3206_18421 lp_3206 Target: lp_3206; Loc: 2857513-2858409; Strand: -; GeneSymb: -; Descrption: LysR family transcriptional regulator CGACTGATGACGTTGCGGATAAGAACTTTATTCTACAACAAAGCGATTATGACCGGGACA
CUST_lp_3454_21441 lp_3454 Target: lp_3454; Loc: 3063017-3063295; Strand: -; GeneSymb: -; Descrption: cell surface protein (putative) AGCTAGTCAAGTTACCACTAGTAGCTGATACGCAATCAGGCACTTACCACTTAACGATCA
CUST_lp_2223_16792 lp_2223 Target: lp_2223; Loc: 2005442-2006104; Strand: -; GeneSymb: -; Descrption: GTP pyrophosphokinase CAGGTCGTTGATTTATTGCGAAAACGGACGGATATGACAATTCTGGAAGAACGCGATTAC
CUST_lp_0874_23083 lp_0874 Target: lp_0874; Loc: 809220-810851; Strand: +; GeneSymb: -; Descrption: bifunctional protein: aminotransferase (pyridoxal-phosphate-dependent) ; 2-hydroxyacid dehydrogenase ACACGTGGGTTTCTATACGAATTTAGCGGTCAAAAACATGGTCGATATTAGCCTGGATGA
CUST_lp_2298_27372 lp_2298 Target: lp_2298; Loc: 2073516-2076206; Strand: -; GeneSymb: hexA; Descrption: DNA mismatch repair protein MutS/HexA GTCTTGCAAAGTTTCGCCGTCGTTAGTGAAGATTACCACTTTGTTCGACCGAAATTAACT
CUST_lp_1776_11582 lp_1776 Target: lp_1776; Loc: 1608459-1609565; Strand: +; GeneSymb: -; Descrption: oxidoreductase, FAD-dependent ATGGGAACGATTGAGAAATTAACTGCTGAAGAAGTTCAAGAACGGATCCCACTGCTAACG
CUST_lp_1249_14081 lp_1249 Target: lp_1249; Loc: 1133122-1134477; Strand: -; GeneSymb: gntP; Descrption: gluconate transport protein GAATTGCCATGTTAATTTCACTATTATTCGCCCTCTGGTCAATGGGGATTCACCAACACA
CUST_lp_2376_16321 lp_2376 Target: lp_2376; Loc: 2145437-2146456; Strand: -; GeneSymb: -; Descrption: translation factor, SUA5 family AGACGGAAATTAAAGATATTCTGTGCCAAGCCTTTGAAAATAAAGGACTTGGGCTTGCCT

Total number of rows: 9335

Table truncated, full table size 1809 Kbytes.




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