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Platform GPL23273 Query DataSets for GPL23273
Status Public on Dec 01, 2022
Title JCVI PFGRC Bacillus anthracis 27K v2 array designed primarily based on strain Ames
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Bacillus anthracis
Manufacturer JCVI PFGRC
Manufacture protocol 2QBA, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
 
 
Submission date Apr 10, 2017
Last update date Dec 01, 2022
Contact name Hyunwoo Lee
E-mail(s) hlee31@uic.edu
Organization name University of Illinois at Chicago
Department Center for Biomolecular Sciences
Street address 900 S. Ashland Ave., MBRB #3020
City Chicago
State/province IL
ZIP/Postal code 60607
Country USA
 
Samples (4) GSM2572238, GSM2572239, GSM2572240, GSM2572241
Series (1)
GSE97567 Identification of Bacillus anthracis genes differentially expressed in human serum

Data table header descriptions
ID
SPOT_ID
SEQUENCE
GC%
Self-Annealing Score
Internal Repeat Score
Primary Strain
Primary Target
Common Name of Primary Target
Gene Symbol
Strain A2012
Strain Ames

Data table
ID SPOT_ID SEQUENCE GC% Self-Annealing Score Internal Repeat Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain A2012 Strain Ames
1 2QBA00001_D_1 AAATTTCATACTTATCTAAATCAAGTAACAGGAAAAAGTTTGACATATGGTATATGCTCTGCCAGACTGC 32.86 85 30 A2012 BXB0080 hypothetical protein BXB0080::70::100.0::2.1E-11::+
2 2QBA00001_H_1 ATCCGCAAAAAACGGGTAAACGTTACAGGGACTTTAATTGCTGTAACGGGAAGGGACTTAATATGGAAGA 41.43 88 30 Ames BA2200 hypothetical protein BA2200::70::100.0::2.1E-11::+
3 2QBA00001_L_1 TTGACATATATTTTAGAACATGTTAAAAATATAAATAACTTTTATCTTAATCAAATGCATATTCGAGCAT 20 124 32 A2012 BXB0077 hypothetical protein BXB0077::70::100.0::2.0E-11::+
4 2QBA00001_P_1 TCCCTATTATGTGGTTAACTATTATGATATCCGAGATGAGGTTGTTCTTACAATTGAGAAAAATAAATAT 28.57 84 31 Ames BA2461 hypothetical protein BA2461::70::100.0::2.0E-11::+
5 2QBA00001_D_13 TTTAGAAATAAAAAACTACATCATACGGAAAAGCTATATGAATTGACTCAAAAGAAATTTGAAAGGAATG 25.71 72 33 Ames BA2619 hypothetical protein BA2619::70::100.0::2.1E-11::+
6 2QBA00001_H_13 TCTTTTTTCTTAGGGTGGATTGAATTTGTAAAAGTTATCCCATGTGTAGTAAATGGAAATAAGTGTACTT 30 92 32 Ames BA0017 hypothetical protein BA0017::70::100.0::2.0E-11::+
7 2QBA00001_L_13 GATCTATAGCGATCCAAAAGATGCAGCTAATATGCAAACGGTACCGCAGCCGAAAGATTTTGATGAAATT 40 86 30 Ames BA2679 hypothetical protein BA2679::70::100.0::2.0E-11::+
8 2QBA00001_P_13 TTAACGTTAGCAATGGCATGGGGTATTTCATTAGGAGATACAGCTTTAGAGAAAAACCAAGTAATTTCTC 35.71 90 28 Ames BA5594 "PlcR associated protein, PapR" papR BA5594::70::100.0::2.0E-11::+
9 2QBA00002_D_1 AACGTCAGTAGCAACAACATATAAAGATACAGGATTAACAGGTGATACAACATATTCTTATCAAGTGAAA 31.43 75 31 Ames BA4090 conserved domain protein BA4090::70::100.0::1.4E-11::+
10 2QBA00002_H_1 TGTTGCTGAAAGTGAAGAAAAGGCATTTAAGATGGCGGAGATTGAGCTTGAAAAACATTTTTTACCGTTA 35.71 78 33 Ames BA1444 hypothetical protein BA1444::70::100.0::1.4E-11::+
11 2QBA00002_L_1 TACTGTAAAGTGATAGAGAGGTGGGAGATAGTGGGAATGAAAACAAAATTATATTTTAGTGTAGCATCTA 32.86 71 31 Ames BA2762 hypothetical protein BA2762::70::100.0::1.4E-11::+
12 2QBA00002_P_1 GACAGAGTGGTTTGAATCATATTTAACGAAAGATGGAATCAAATTAGAAATAAGTAACTTTTTATCAGTA 27.14 86 30 A2012 BXA0169 hypothetical protein BXA0169::70::100.0::1.4E-11::+
13 2QBA00001_D_1 AAATTTCATACTTATCTAAATCAAGTAACAGGAAAAAGTTTGACATATGGTATATGCTCTGCCAGACTGC 32.86 85 30 A2012 BXB0080 hypothetical protein BXB0080::70::100.0::2.1E-11::+
14 2QBA00001_H_1 ATCCGCAAAAAACGGGTAAACGTTACAGGGACTTTAATTGCTGTAACGGGAAGGGACTTAATATGGAAGA 41.43 88 30 Ames BA2200 hypothetical protein BA2200::70::100.0::2.1E-11::+
15 2QBA00001_L_1 TTGACATATATTTTAGAACATGTTAAAAATATAAATAACTTTTATCTTAATCAAATGCATATTCGAGCAT 20 124 32 A2012 BXB0077 hypothetical protein BXB0077::70::100.0::2.0E-11::+
16 2QBA00001_P_1 TCCCTATTATGTGGTTAACTATTATGATATCCGAGATGAGGTTGTTCTTACAATTGAGAAAAATAAATAT 28.57 84 31 Ames BA2461 hypothetical protein BA2461::70::100.0::2.0E-11::+
17 2QBA00001_D_13 TTTAGAAATAAAAAACTACATCATACGGAAAAGCTATATGAATTGACTCAAAAGAAATTTGAAAGGAATG 25.71 72 33 Ames BA2619 hypothetical protein BA2619::70::100.0::2.1E-11::+
18 2QBA00001_H_13 TCTTTTTTCTTAGGGTGGATTGAATTTGTAAAAGTTATCCCATGTGTAGTAAATGGAAATAAGTGTACTT 30 92 32 Ames BA0017 hypothetical protein BA0017::70::100.0::2.0E-11::+
19 2QBA00001_L_13 GATCTATAGCGATCCAAAAGATGCAGCTAATATGCAAACGGTACCGCAGCCGAAAGATTTTGATGAAATT 40 86 30 Ames BA2679 hypothetical protein BA2679::70::100.0::2.0E-11::+
20 2QBA00001_P_13 TTAACGTTAGCAATGGCATGGGGTATTTCATTAGGAGATACAGCTTTAGAGAAAAACCAAGTAATTTCTC 35.71 90 28 Ames BA5594 "PlcR associated protein, PapR" papR BA5594::70::100.0::2.0E-11::+

Total number of rows: 27648

Table truncated, full table size 4300 Kbytes.




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Supplementary file Size Download File type/resource
GPL23273_B_anthracis_2_Ames.annot.txt.gz 843.1 Kb (ftp)(http) TXT

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