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Platform GPL25777 Query DataSets for GPL25777
Status Public on Oct 01, 2019
Title FibroChip Release 2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Bacteroides fragilis; Bacteroides thetaiotaomicron; Butyrivibrio fibrisolvens; Fibrobacter succinogenes; Xylanibacter ruminicola; Selenomonas ruminantium; Ruminococcus albus; Ruminococcus flavefaciens; Enterococcus faecium; Lactococcus lactis; Clostridium acetobutylicum; Clostridium cellulovorans; Clostridioides difficile; Acetivibrio thermocellus; Clostridium beijerinckii; Ruminiclostridium cellulolyticum; Levilactobacillus brevis; Limosilactobacillus fermentum; Bifidobacterium adolescentis; Cellulomonas fimi; Cellulomonas flavigena; Neocallimastix frontalis; Neocallimastix patriciarum; Piromyces communis; Bifidobacterium animalis; Bacteroides ovatus; Fibrobacter intestinalis; [Eubacterium] cellulosolvens; Bacteroides sp.; Pseudobacteroides cellulosolvens; Lachnospira eligens; Agathobacter rectalis; Ruminococcus sp.; Enterobacter sp.; Piromyces sp.; Epidinium caudatum; Eudiplodinium maggii; Polyplastron multivesiculatum; Orpinomyces joyonii; Piromyces rhizinflatus; Segatella bryantii; Piromyces sp. 'equi'; Roseburia intestinalis; Pseudobutyrivibrio xylanivorans; Butyrivibrio hungatei; Bifidobacterium longum; Acetivibrio clariflavus; Epidinium ecaudatum; Roseburia hominis; uncultured Neocallimastigales; Bacteroides xylanisolvens; Cellulosilyticum ruminicola; Ruminococcus champanellensis; Orpinomyces sp.
Manufacturer Agilent technologies
Manufacture protocol see manufacturer's web site at https://www.genomics.agilent.com/en/Custom-Gene-Expression-Microarrays/Custom-Gene-Expression-Microarrays/?cid=AG-PT-132&tabId=AG-PR-1038
 
 
Submission date Nov 07, 2018
Last update date Oct 01, 2019
Contact name Evelyne Forano
E-mail(s) evelyne.forano@inra.fr
Organization name INRA
Department UMR MEDIS
Street address INRA Centre ARA
City Saint Genes Champanelle
State/province France
ZIP/Postal code 63122
Country France
 
Samples (6) GSM3462656, GSM3462657, GSM3462658, GSM3462659, GSM3462660, GSM3462661
Series (1)
GSE122256 Detection of carbohydrate-active enzyme genes in the rumen of young lambs

Data table header descriptions
ID
Organism
Function
ORF "
Design
Length
Zone (5' ->3')
Zone (nt position)
SEQUENCE

Data table
ID Organism Function ORF Design Length Zone (5' ->3') Zone (nt position) SEQUENCE
S1 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s 1 22_47 TGATCCCTTTGTCCGTGTGTCAAAC
S2 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s 2 114_139 TGGGGTCACAGGGACAAGGAGGTAA
S3 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s 3 223_248 AGATGGGATTCCGACGAAAGCTGAG
S4 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s 4 464_489 GTGGCACAATATGCTAAGTCGGAAA
S5 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s 5 593_618 ATAGGTAATGAACCCCGTCCGTTCG
S6 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s 6 745_770 ACTTTGGACTTCTATCCATGCCGAT
S7 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 1_2 TGATCCCTTTGTCCGTGTGTCAAACTCCATGGGGTCACAGGGACAAGGAGGTAA
S8 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 1_3 TGATCCCTTTGTCCGTGTGTCAAACCCTTAGATGGGATTCCGACGAAAGCTGAG
S9 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 1_4 TGATCCCTTTGTCCGTGTGTCAAACTCTCGTGGCACAATATGCTAAGTCGGAAA
S10 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 1_5 TGATCCCTTTGTCCGTGTGTCAAACCCTTATAGGTAATGAACCCCGTCCGTTCG
S11 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 2_3 TGGGGTCACAGGGACAAGGAGGTAATTCTAGATGGGATTCCGACGAAAGCTGAG
S12 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 2_4 TGGGGTCACAGGGACAAGGAGGTAAAACAGTGGCACAATATGCTAAGTCGGAAA
S13 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 2_5 TGGGGTCACAGGGACAAGGAGGTAATTCTATAGGTAATGAACCCCGTCCGTTCG
S14 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 2_6 TGGGGTCACAGGGACAAGGAGGTAATTATACTTTGGACTTCTATCCATGCCGAT
S15 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 3_4 AGATGGGATTCCGACGAAAGCTGAGAACAGTGGCACAATATGCTAAGTCGGAAA
S16 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 3_5 AGATGGGATTCCGACGAAAGCTGAGTTTCATAGGTAATGAACCCCGTCCGTTCG
S17 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 3_6 AGATGGGATTCCGACGAAAGCTGAGTTATACTTTGGACTTCTATCCATGCCGAT
S18 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 4_5 GTGGCACAATATGCTAAGTCGGAAACCTTATAGGTAATGAACCCCGTCCGTTCG
S19 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 4_6 GTGGCACAATATGCTAAGTCGGAAACCATACTTTGGACTTCTATCCATGCCGAT
S20 Bacteroides fragilis YCH46 GH5 BAD47591 HiSpOD 25s4e25s 5_6 ATAGGTAATGAACCCCGTCCGTTCGCCATACTTTGGACTTCTATCCATGCCGAT

Total number of rows: 4506

Table truncated, full table size 622 Kbytes.




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Supplementary data files not provided
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