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Platform GPL5348 Query DataSets for GPL5348
Status Public on Jun 05, 2007
Title JCVI PFGRC Bacillus anthracis 20K v3 array designed primarily based on strain A2012
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Bacillus anthracis
Manufacturer JCVI PFGRC
Manufacture protocol 3QBA, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Support glass
Coating aminosilane
 
Description This set includes 5821 oligonucleotides, has 20160 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jun 01, 2007
Last update date Mar 25, 2010
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain A2012 Target map of strain A2012
Strain Ames Target map of strain Ames
ORF primary target link in Entrez Gene
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain A2012 Strain Ames ORF SPOT_ID
3QBA00001_A_1 TGCTTTATCGATTATTGTTGCAGCAATTACGGTGTACTTAGTTTATGCATTATTAAATCCGGAAAAGTTT 31.43 32 92 Ames BA0738.1 hypothetical protein BA0738.1::70::100.0::3.6E-11::+ BA0738.1 BA0738.1
3QBA00001_A_10 AAGTCATTAGTAAAAAAATACATAAGAGAAGAATATAAAAATAAGTGGCAGAGTCGTGACCGCTTTTTGG 31.43 31 66 Ames BA0459 hypothetical protein BA0459::70::100.0::2.6E-11::+ BA0459
3QBA00001_A_11 TTACGGGATTTTCAATTGGGTGTGTTGGAAAACAATGCATATATGATTTTCAACATAAAAGTTTTCCTTT 30.0 31 118 A2012 BXB0047 hypothetical protein BXB0047::70::100.0::3.1E-11::+ BXB0047
3QBA00001_A_12 GGTTTCGCTGGAGGATTTGCTTTATTAGTTGTATTATTTATTCTATTAATCATTATCGGATGTAGTTGTT 30.0 32 62 Obsolete Obsolete Obsolete --Obsolete
3QBA00001_A_13 GTTTCAAATCAATACAGGAATTAAAAGACCATAGAGAAAGGAATGAGGGGAGTGGTAAATCAAAATGTAT 32.86 32 63 A2012 BXB0050 hypothetical protein BXB0050::70::100.0::3.1E-11::+ BXB0050
3QBA00001_A_14 ATTAAAAGAAGTTTTAACAAGACGTATTAAAAATGCTTTCATTATGATGGAATTTGTAGAACCAATTGTT 24.29 31 110 Ames BA2365 hypothetical protein BA2365::70::100.0::2.6E-11::+ BA2365
3QBA00001_A_15 TGTACTTGCGATGACAATAATGGCTTTCTTCATATTCGTTTACCCCTTTTTTATTGTTGGTTTAATTCTT 31.43 31 52 Ames BA0226 hypothetical protein BA0226::70::100.0::3.1E-11::+ BA0226
3QBA00001_A_16 AAGAAGATGGGAGAAAAGAGAGGAAAAATAATTCAAAACAAAGTAACACCTGAAATGCTAGATGAAGCAG 34.29 33 36 Ames BA2471 hypothetical protein BA2471::70::100.0::2.6E-11::+ BA2471
3QBA00001_A_17 GCAAGATCTTTCATTATAAAGAACAAATGTAGTTTGAATGGTGAAACAACAACACCAGTAATTGTAACAA 30.0 30 87 Ames BA0940 hypothetical protein BA0940::70::100.0::3.1E-11::+ BA0940
3QBA00001_A_18 GTGTATGTTTTTAAATAAGCTTGGTGCTTTTTCACATAAAATTAACATTTCAAGAGGAGCTTGTCTGAAA 30.0 32 94 Ames BA2595 hypothetical protein BA2595::70::100.0::2.6E-11::+ BA2595
3QBA00001_A_19 AGTTTACTATATAATAGAGTAGAGTTGGAGGAAAGAATAAAAGGTGTTGGACATACAGTTTGGTTTATTT 30.0 32 68 Ames BA1547 hypothetical protein BA1547::70::100.0::3.1E-11::+ BA1547
3QBA00001_A_2 CGAAGAACTTATACAGTTTGTAGAAGAAAATAAGCAAGAGCATTTTCAAGATATAATCAGTCAGAACGAA 31.43 32 79 A2012 BXA0027 hypothetical protein, BXA0027::70::100.0::2.6E-11::+ BXA0027
3QBA00001_A_20 AAGGTAATGGGATTTGGGAAGGTGATGCTTTTGGTAATATTGTCTCATCTTCTTTAGAATCTGTTACGAA 35.71 30 81 Ames BA3188 hypothetical protein BA3188::70::100.0::2.6E-11::+ BA3188
3QBA00001_A_21 AAGTCTATGGGATATTAAGAATGTACAAAAGATCAAGTTGAAATTAGAAATTGCAGTTGATGTACATTCC 30.0 30 134 Ames BA2391 hypothetical protein BA2391::70::100.0::3.1E-11::+ BA2391
3QBA00001_A_22 AGAAATTCAAAGCTTTTTATCGCCAAATATCTTACGAAATCTTGCCAGAGAGTTTGGTTTTTTACGATGA 32.86 32 99 Ames BA3300 hypothetical protein BA3300::70::100.0::2.6E-11::+ BA3300
3QBA00001_A_23 AAGAAGAAGAGGTTTCCGAGAAAGTTTATAATTACTTACGTCGTAATGAATTTTTCGAAGTACGCAAAGA 32.86 31 120 Ames BA2893 hypothetical protein BA2893::70::100.0::3.1E-11::+ BA2893
3QBA00001_A_24 GGAGCAGTTTTTATATGTAGTTTTATTTGTTATAAAGAAGATTACTATCCCTTTCTTAAATAAAGTAAGA 24.29 31 104 Ames BA3579 hypothetical protein BA3579::70::100.0::2.6E-11::+ BA3579
3QBA00001_A_3 TACTTATGGGGAAAACGCAGTTAAAGAGTTCTTTAAGAAGCAAGAACTGGAACGAAATATAAAAGCAGCT 35.71 31 82 Ames BA2616 hypothetical protein BA2616::70::100.0::3.3E-11::+ BA2616
3QBA00001_A_4 ATGAAATGGTGCTGAATAGATTAAACGTACCGTCTTCAACAAACTGTAGGAAAACAATACTTTTATGGGA 34.29 32 94 A2012 BXA0134 hypothetical protein BXA0134::70::100.0::2.6E-11::+ BXA0134
3QBA00001_A_5 ATGGTAGCTCGTATACATCTTATTAAATTTAAAGTGGTTATCAAGTCGAAGAAAAGGCACTCAAATGAGT 32.86 30 86 A2012 BXA0001 hypothetical protein BXA0001::70::100.0::3.1E-11::+ BXA0001

Total number of rows: 6323

Table truncated, full table size 1103 Kbytes.




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