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Status
Public on Sep 20, 2007
Title
WCFS Lactobacillus plantarum 15K 60-mer array, Version 3, our ID LPAG3_8
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Lactiplantibacillus plantarum WCFS1 Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Support
glass
Coating
unknown
Description
This array contains 60-mer probes that are designed for L. plantarum strain WCFS1. The sequence of this organism is present in public databases, Acc. Nr. AL935263.
Contributor(s)
Molenaar D Submission date
Sep 17, 2007
Last update date
Dec 04, 2007
Contact name
Douwe Molenaar
E-mail(s)
douwe.molenaar@falw.vu.nl Organization name
Vrije Universiteit Amsterdam
Department
Systems Bioinformatics
Street address
De Boelelaan 1085
City
Amsterdam
ZIP/Postal code
1081 HV
Country
Netherlands
Samples (40)
GSM251906 , GSM251907 , GSM251908 , GSM251909 , GSM251910 , GSM251911
GSM251912 ,
GSM251913 ,
GSM251914 ,
GSM251915 ,
GSM251916 ,
GSM251917 ,
GSM251918 ,
GSM251919 ,
GSM251920 ,
GSM251921 ,
GSM457822 ,
GSM457823 ,
GSM457824 ,
GSM457825 ,
GSM457826 ,
GSM457827 ,
GSM457828 ,
GSM457829 ,
GSM457830 ,
GSM457831 ,
GSM457832 ,
GSM457833 ,
GSM457834 ,
GSM457835 ,
GSM457836 ,
GSM457837 ,
GSM457838 ,
GSM457839 ,
GSM457840 ,
GSM457841 ,
GSM457842 ,
GSM685666 ,
GSM685667 ,
GSM685668 Series (4)
GSE9961 Mutant gshF peroxide treatment
GSE18339 citrate vs nitrate Reducing cultures
GSE18340 Anaerobic carbon-limited retentostat cultivation of Lactobacillus plantarum WCFS1
Data table header descriptions ID Unique spot identifier
ROW Row within array
COLUMN Column within array
OLIGO_ID Oligonucleotide identifier
SEQUENCE Sequence of oligonucleotide probe
ORF Locus tag
SPOT_ID
Data table ID ROW COLUMN OLIGO_ID SEQUENCE ORF SPOT_ID 1
1
1
GE_BrightCorner
--GE_BrightCorner
2
1
2
GE_BrightCorner
--GE_BrightCorner
3
1
3
DarkCorner
--DarkCorner
4
1
4
DarkCorner
--DarkCorner
5
1
5
AG3lp_3630#1
CTACCCCGACGACTAAGGCAGCGTTCATGGATCTATTGCAGCGTGAAGTGGAACAAATGA
lp_3630 6
1
6
AG1lp_2324#3
AAGGACTTGCTCATCGTTATGGCCGACGACGTCAAATGTTGTCAGGTGTTCACTGTAATG
lp_2324 7
1
7
AG1lp_0206#3
GCTATGGCGAAATTTTGGGGATGAAGCGCCGTTTGCCAATTCACGAAAAGTGGTTCTAGA
lp_0206 8
1
8
AG1lp_0276#2
TGACTAAGGCCATTACCCGCCAATTACAACGTCAATATGCCGAACCAGTTCTGAAAGATC
lp_0276 9
1
9
AG1lp_0395#2
ACGACAGGTACAAACCAAGAACAAGGCGTCTTACAGTGGATCAAAAACTGGTTGGAGGCG
lp_0395 10
1
10
AG1lp_3487#2
TGGAACACAACTGATGATCGGACCAGTTTGGCCCAACAAAAATTACAGATTACGAGTGCA
lp_3487 11
1
11
AG3lp_0056#2
ATTATTCCATGGGTACTATATAAAGTCTATCCCCCTGAGGTGAAACAAACGCCAGACGCG
lp_0056 12
1
12
AG1lp_1687#2
GGTGCCGTGAACCGCCAAGACGGCCAAATCATTGCGACAAATATTAATACCATCTTTATC
lp_1687 13
1
13
AG3lp_3541#1
TGTTAAAGAAGATATCCAAGTGGATCATTCTGATGTTGGGAGCGTTGGCGCTGATTCAGC
lp_3541 14
1
14
AG1lp_1485#2
AAGTTAAACGCGAAGTATGATAATATCGCAATTTACACGTCCGGCTTCTATGCGGACCCC
lp_1485 15
1
15
AG3lp_0062#3
ATGAGGATGGGAATATTACGAAGGAACGCTTGGATCAGATTCTGGGAACCTTCTTACCAT
lp_0062 16
1
16
AG1lp_0317#1
AAGTCGTAACACCGCCTACTTTATCCCGTACATGTTGTGGATCATCCTCTTCGTCATTGC
lp_0317 17
1
17
AG1lp_1056#3
CCATTAAAGGTGAACGTTGCCGGGGTTATTCCTGTTATTTTCGCGAGTTCCTTCATTGCA
lp_1056 18
1
18
AG1lp_2932#3
AAGGAGCACCGAACTGCGATTTTTCCTAAATTGATCTTCACGATGAAGCGGGGGTTAAAT
lp_2932 19
1
19
ETG07_105829
--ETG07_105829
20
1
20
AG1lp_1579#2
TAATGCCGGAAGAGCAGGCGGGCATTCCCCACCATCTAATCGATATCAAAAATATTGATC
lp_1579
15744 1426 Kbytes .Supplementary data files not provided
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