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Platform GPL7085 Query DataSets for GPL7085
Status Public on Jul 26, 2008
Title Flibotte human 380k oligotest
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Roche NimbleGen
Manufacture protocol see NimbleGen's website
 
Description build hg36 (hg18)
 
Contributor(s) Flibotte S, Moerman DG
Submission date Jul 22, 2008
Last update date Jul 26, 2008
Contact name Stephane Flibotte
Organization name University of British Columbia
Department Faculty of Science
Lab UBC/LSI Bioinformatics Core Facility
Street address 2370-6270 University Blvd.
City Vancouver
State/province BC
ZIP/Postal code V6T 1Z3
Country Canada
 
Samples (1) GSM307127
Series (1)
GSE12208 Experimental analysis of oligonucleotide microarray design criteria to detect deletions by CGH

Data table header descriptions
ID
SEQUENCE oligonucleotide sequence
CHROMOSOME chromosome
RANGE_START coordinate of the start of the oligonucleotide
CODE P for perfect matched oligonucleotides, and N, L, R, C, S for perturbed oligonucleotides
RANGE_GB
RANGE_END

Data table
ID SEQUENCE CHROMOSOME RANGE_START CODE RANGE_GB RANGE_END
CHR1050N003760977 TGGTTATCTCACTCGAACCAAACTGGACGTACACTACAATGTACGGAGAC chr10 3760977 N NC_000010.9 3761026
CHR1050N004417514 ACCGACTAGTCTAGTTTCATTCTTACGCCCGCCCGCTCTTCTCGATGTCC chr10 4417514 N NC_000010.9 4417563
CHR1050N005051101 TATGTCTTCTTTCTTCTTCGTCTGTGTTTTGAGAGTGTTGAGCTCATCTG chr10 5051101 N NC_000010.9 5051150
CHR1050N005951638 AATGGGCGTACCCGTTTCGAAGTATGTGACACCACCGCATGGCCATATAA chr10 5951638 N NC_000010.9 5951687
CHR1050N006580619 ATCAGATCTGTTCGCGGAACGTAACCGTCTTCTGACGTGACAAAGCGTGA chr10 6580619 N NC_000010.9 6580668
CHR1050N007231674 GGGTCTATTAAAGCTTAGCAGTGATAAAGTAGTAGAGAATAAATGTTGAC chr10 7231674 N NC_000010.9 7231723
CHR1050N008144080 TGCAGAACATATTCCCGCGAACCGTGTACGATTTCGCCAATCCCGTACCC chr10 8144080 N NC_000010.9 8144129
CHR1050N008769208 TTTGTGTATCGCTTAGCCTATTGTTAAAACTGAGGAGACGTGTCATGAAA chr10 8769208 N NC_000010.9 8769257
CHR1050N010515501 AAGTGGTTTAACTTGTGAACGTATCCTGATACGATAGTTAGGCTCCAAAC chr10 10515501 N NC_000010.9 10515550
CHR1050N011148946 GAATGATTACTCAATTCATAAATGGATAACAAGATGGCAGTTGTGCTCAG chr10 11148946 N NC_000010.9 11148995
CHR1050N011773047 CACGAACGGGCGCTTCAGGCAACGGTCTGTGTGATCAGGATCAAGGGGCG chr10 11773047 N NC_000010.9 11773096
CHR1050N012711101 CCAGGAGAAGATTGGGGGGCGGTGGGGTCGCCGGTCATCAAGCCTCTTGG chr10 12711101 N NC_000010.9 12711150
CHR1050N013343505 AGCGAATGAGCATCAACCCGTTTCCGCTCTATTTTCTGTATTGCCGCACA chr10 13343505 N NC_000010.9 13343554
CHR1050N014110950 ATGAAACGGGAATTTGCCTAACCCACATGTGAAGATATCAAACTACTTCA chr10 14110950 N NC_000010.9 14110999
CHR1050N014774430 GGGTGCGGATATAAGGAGACAAGCATATTCCTACCAGTAAGTCTGTCTCC chr10 14774430 N NC_000010.9 14774479
CHR1050N015470692 CTTAATTATTTTGGTATTAGTCAGTGGTAAGAGGAATTACATGCGGACAG chr10 15470692 N NC_000010.9 15470741
CHR1050N016227369 CAACGTGACTCTGTTCTTTATAAACCTCCCCTCAGCATCGCCACTTTGAT chr10 16227369 N NC_000010.9 16227418
CHR1050N017032730 TGAGTTAACATGATGACCCCGGTTAGAAGGATTGCGTGACAGAATGATCG chr10 17032730 N NC_000010.9 17032779
CHR1050N017666551 TTATTACATCAAAACTTCTCTCCCATGTGTTTCCATACATACAATTGCTA chr10 17666551 N NC_000010.9 17666600
CHR1050N018326081 ATATCCGTGCTGAATCGGGGTGATGGCTCGATGGATATTAAATCAAATTT chr10 18326081 N NC_000010.9 18326130

Total number of rows: 380170

Table truncated, full table size 43160 Kbytes.




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Supplementary file Size Download File type/resource
GPL7085.ndf.gz 18.2 Mb (ftp)(http) NDF
GPL7085.pos.gz 4.1 Mb (ftp)(http) POS

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