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| Status |
Public on Aug 29, 2009 |
| Title |
JCVI PFGRC Bacillus anthracis 25K vt3b array designed primarily based on strain Sterne |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Bacillus anthracis |
| Manufacturer |
JCVI PFGRC |
| Manufacture protocol |
T3BQBC, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
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| Coating |
aminosilane |
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| Description |
This set includes 20262 oligonucleotides, has 25392 spots distributed in 48 blocks.
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| Web link |
http://pfgrc.jcvi.org/descriptionPages.shtml
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| Submission date |
Aug 25, 2009 |
| Last update date |
Nov 10, 2009 |
| Contact name |
PFGRC JCVI |
| E-mail(s) |
jli@jcvi.org
|
| Phone |
3017957840
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| Organization name |
J. Craig Venter Institute
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| Department |
PFGRC
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| Street address |
9704 Medical Center Drive
|
| City |
Rockville |
| State/province |
MD |
| ZIP/Postal code |
20850 |
| Country |
USA |
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| Samples (264)
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GSM470538, GSM470539, GSM470540, GSM470541, GSM470542, GSM470544
GSM470546, GSM470547, GSM470549, GSM470551, GSM470553, GSM470554, GSM470556, GSM470568, GSM470797, GSM470799, GSM470801, GSM470802, GSM470803, GSM470805, GSM470807, GSM470808, GSM470809, GSM470811, GSM470812, GSM470813, GSM470815, GSM470817, GSM470818, GSM470820, GSM470821, GSM470823, GSM470826, GSM470827, GSM470828, GSM470830, GSM470831, GSM470834, GSM470898, GSM470899, GSM470900, GSM470901, GSM470902, GSM470903, GSM470904, GSM470905, GSM470906, GSM471270, GSM471271, GSM471272, GSM471273, GSM471274, GSM471275, GSM471276, GSM471277, GSM471278, GSM471279, GSM471280, GSM471281, GSM471282, GSM471283, GSM471305, GSM471306, GSM471307, GSM471308, GSM471309, GSM471310, GSM471311, GSM471312, GSM471313, GSM471314, GSM471315, GSM471316, GSM471317, GSM471378, GSM471439, GSM471440, GSM471441, GSM471442, GSM471443, GSM471444, GSM471445, GSM471446, GSM471447, GSM471448, GSM471449, GSM471450, GSM471451, GSM471452, GSM471453, GSM471454, GSM471464, GSM471465, GSM471466, GSM471467, GSM471468, GSM471469, GSM471470, GSM471471, GSM471472, GSM471473, GSM473480, GSM473579, GSM473590, GSM473593, GSM473595, GSM473597, GSM473600, GSM473601, GSM473602, GSM473607, GSM473608, GSM473609, GSM473610, GSM473611, GSM473612, GSM473613, GSM473614, GSM473615, GSM473646, GSM473647, GSM473648, GSM473649, GSM473650, GSM473651, GSM473652, GSM473653, GSM473666, GSM473667, GSM473668, GSM473669, GSM473670, GSM473671, GSM473672, GSM473673, GSM473674, GSM473679, GSM473680, GSM473681, GSM473682, GSM473683, GSM473684, GSM473685, GSM473686, GSM473707, GSM473708, GSM473709, GSM473710, GSM473711, GSM473712, GSM473713, GSM473714, GSM473715, GSM473716, GSM473717, GSM473718, GSM473719, GSM473720, GSM473721, GSM473722, GSM473723, GSM473724, GSM473725, GSM473836, GSM473837, GSM473838, GSM473839, GSM473840, GSM473841, GSM473842, GSM473843, GSM473844, GSM473845, GSM473846, GSM473847, GSM473856, GSM473857, GSM473858, GSM473859, GSM473860, GSM473861, GSM473862, GSM473863, GSM473864, GSM473865, GSM473866, GSM473867, GSM473868, GSM473869, GSM473870, GSM473871, GSM473872, GSM473873, GSM473874, GSM473875, GSM473876, GSM473877, GSM473878, GSM473879, GSM473880, GSM473881, GSM473882, GSM473883, GSM473884, GSM473885, GSM473887, GSM473888, GSM473889, GSM473890, GSM473892, GSM473893, GSM473895, GSM473897, GSM473898, GSM473901, GSM473903, GSM473905, GSM473906, GSM473908, GSM473910, GSM474007, GSM474047, GSM474048, GSM474049, GSM474051, GSM474052, GSM474053, GSM474054, GSM474055, GSM474057, GSM474059, GSM474061, GSM474062, GSM474063, GSM474065, GSM474066, GSM474068, GSM474069, GSM474071, GSM474072, GSM474074, GSM474075, GSM474078, GSM474080, GSM474083, GSM474084, GSM474086, GSM474088, GSM474089, GSM474091, GSM474092, GSM474094, GSM474095, GSM474096, GSM474097, GSM474099, GSM474101, GSM474102, GSM474105, GSM474107, GSM474109, GSM474111, GSM474113, GSM474116
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| Series (2) |
| GSE19071 |
Isolation and characterization of environmental Bacillus isolates which may harbor B. anthracis virulence genes |
| GSE19125 |
CGH profiling of Bacillus cereus isolates from the CDC historical strain collection |
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| Data table header descriptions |
| ID |
Unique identification of each oligo |
| SEQUENCE |
Oligo sequence |
| GC% |
GC content of the sequence |
| Internal Repeat Score |
Internal repeat score |
| Self-Annealing Score |
Self-anneal score |
| Primary Strain |
The strain of primary target |
| Primary Target |
Locus primarily hit by the oligo |
| Common Name of Primary Target |
Common name of primary target |
| Gene Symbol |
Gene symbol |
| Strain A2012 |
Target map of strain A2012 |
| Strain Ames |
Target map of strain Ames |
| Strain 10987 |
Target map of strain 10987 |
| Strain 14579 |
Target map of strain 14579 |
| Strain G9241 |
Target map of strain G9241 |
| Strain ghm12 |
Target map of strain ghm12 |
| Strain UW85 |
Target map of strain UW85 |
| Strain 4D1 |
Target map of strain 4D1 |
| Strain 4F4 |
Target map of strain 4F4 |
| Strain 6E1 |
Target map of strain 6E1 |
| Strain AH647 |
Target map of strain AH647 |
| Strain AH818 |
Target map of strain AH818 |
| Strain F3942 |
Target map of strain F3942 |
| Strain Sterne |
Target map of strain Sterne |
| ORF |
ORF Name |
| SPOT_ID |
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| Data table |
| ID |
SEQUENCE |
GC% |
Internal Repeat Score |
Self-Annealing Score |
Primary Strain |
Primary Target |
Common Name of Primary Target |
Gene Symbol |
Strain A2012 |
Strain Ames |
Strain 10987 |
Strain 14579 |
Strain G9241 |
Strain ghm12 |
Strain UW85 |
Strain 4D1 |
Strain 4F4 |
Strain 6E1 |
Strain AH647 |
Strain AH818 |
Strain F3942 |
Strain Sterne |
ORF |
SPOT_ID |
| T3BQBC00001_A_1 |
TGCTTTATCGATTATTGTTGCAGCAATTACGGTGTACTTAGTTTATGCATTATTAAATCCGGAAAAGTTT |
31.43 |
32 |
92 |
Ames |
BA0738.1 |
hypothetical protein |
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BA0738.1::70::100.0::2.7E-10::+ |
BCE0808.1::70::94.28571::1.1E-8::+ |
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BA0738.1 |
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| T3BQBC00001_A_10 |
AAGTCATTAGTAAAAAAATACATAAGAGAAGAATATAAAAATAAGTGGCAGAGTCGTGACCGCTTTTTGG |
31.43 |
31 |
66 |
Ames |
BA0459 |
hypothetical protein |
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BA0459::70::100.0::2.0E-10::+ |
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BA0459 |
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| T3BQBC00001_A_11 |
TTACGGGATTTTCAATTGGGTGTGTTGGAAAACAATGCATATATGATTTTCAACATAAAAGTTTTCCTTT |
30 |
31 |
118 |
A2012 |
BXB0047 |
hypothetical protein |
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BXB0047::70::100.0::2.3E-10::+ |
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BXB0047 |
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| T3BQBC00001_A_12 |
GGTTTCGCTGGAGGATTTGCTTTATTAGTTGTATTATTTATTCTATTAATCATTATCGGATGTAGTTGTT |
30 |
32 |
62 |
Obsolete |
Obsolete |
Obsolete |
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BCE1063::70::97.14286::9.1E-10::+ |
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--Obsolete |
| T3BQBC00001_A_13 |
GTTTCAAATCAATACAGGAATTAAAAGACCATAGAGAAAGGAATGAGGGGAGTGGTAAATCAAAATGTAT |
32.86 |
32 |
63 |
A2012 |
BXB0050 |
hypothetical protein |
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BXB0050::70::100.0::2.3E-10::+ |
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BXB0050 |
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| T3BQBC00001_A_14 |
ATTAAAAGAAGTTTTAACAAGACGTATTAAAAATGCTTTCATTATGATGGAATTTGTAGAACCAATTGTT |
24.29 |
31 |
110 |
Ames |
BA2365 |
hypothetical protein |
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BA2365::70::100.0::2.0E-10::+ |
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BA2365 |
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| T3BQBC00001_A_15 |
TGTACTTGCGATGACAATAATGGCTTTCTTCATATTCGTTTACCCCTTTTTTATTGTTGGTTTAATTCTT |
31.43 |
31 |
52 |
Ames |
BA0226 |
hypothetical protein |
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BA0226::70::100.0::2.3E-10::+ |
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BA0226 |
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| T3BQBC00001_A_16 |
AAGAAGATGGGAGAAAAGAGAGGAAAAATAATTCAAAACAAAGTAACACCTGAAATGCTAGATGAAGCAG |
34.29 |
33 |
36 |
Ames |
BA2471 |
hypothetical protein |
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BA2471::70::100.0::2.0E-10::+ |
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BA2471 |
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| T3BQBC00001_A_17 |
GCAAGATCTTTCATTATAAAGAACAAATGTAGTTTGAATGGTGAAACAACAACACCAGTAATTGTAACAA |
30 |
30 |
87 |
Ames |
BA0940 |
hypothetical protein |
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BA0940::70::100.0::2.3E-10::+ |
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ORFF00122::70::91.42857::6.3E-8::+ |
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BA0940 |
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| T3BQBC00001_A_18 |
GTGTATGTTTTTAAATAAGCTTGGTGCTTTTTCACATAAAATTAACATTTCAAGAGGAGCTTGTCTGAAA |
30 |
32 |
94 |
Ames |
BA2595 |
hypothetical protein |
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BA2595::70::100.0::2.0E-10::+ |
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BA2595 |
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| T3BQBC00001_A_19 |
AGTTTACTATATAATAGAGTAGAGTTGGAGGAAAGAATAAAAGGTGTTGGACATACAGTTTGGTTTATTT |
30 |
32 |
68 |
Ames |
BA1547 |
hypothetical protein |
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BA1547::70::100.0::2.3E-10::+ |
BCE1652::70::92.85714::2.5E-8::+ |
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BA1547 |
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| T3BQBC00001_A_2 |
CGAAGAACTTATACAGTTTGTAGAAGAAAATAAGCAAGAGCATTTTCAAGATATAATCAGTCAGAACGAA |
31.43 |
32 |
79 |
A2012 |
BXA0027 |
hypothetical protein, |
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BXA0027::70::100.0::2.0E-10::+ |
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ORFD00024::70::98.57143::1.1E-10::-,ORFD00023::70::98.57143::4.6E-10::+ |
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BXA0027 |
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| T3BQBC00001_A_20 |
AAGGTAATGGGATTTGGGAAGGTGATGCTTTTGGTAATATTGTCTCATCTTCTTTAGAATCTGTTACGAA |
35.71 |
30 |
81 |
Ames |
BA3188 |
hypothetical protein |
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BA3188::70::100.0::2.0E-10::+ |
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BA3188 |
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| T3BQBC00001_A_21 |
AAGTCTATGGGATATTAAGAATGTACAAAAGATCAAGTTGAAATTAGAAATTGCAGTTGATGTACATTCC |
30 |
30 |
134 |
Ames |
BA2391 |
hypothetical protein |
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BA2391::70::100.0::2.3E-10::+ |
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BA2391 |
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| T3BQBC00001_A_22 |
AGAAATTCAAAGCTTTTTATCGCCAAATATCTTACGAAATCTTGCCAGAGAGTTTGGTTTTTTACGATGA |
32.86 |
32 |
99 |
Ames |
BA3300 |
hypothetical protein |
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BA3300::70::100.0::2.0E-10::+ |
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BA3300 |
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| T3BQBC00001_A_23 |
AAGAAGAAGAGGTTTCCGAGAAAGTTTATAATTACTTACGTCGTAATGAATTTTTCGAAGTACGCAAAGA |
32.86 |
31 |
120 |
Ames |
BA2893 |
hypothetical protein |
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BA2893::70::100.0::2.3E-10::+ |
BCE2933::70::97.14286::1.5E-9::+ |
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BA2893 |
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| T3BQBC00001_A_24 |
GGAGCAGTTTTTATATGTAGTTTTATTTGTTATAAAGAAGATTACTATCCCTTTCTTAAATAAAGTAAGA |
24.29 |
31 |
104 |
Ames |
BA3579 |
hypothetical protein |
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BA3579::70::100.0::2.0E-10::+ |
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BA3579 |
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| T3BQBC00001_A_3 |
TACTTATGGGGAAAACGCAGTTAAAGAGTTCTTTAAGAAGCAAGAACTGGAACGAAATATAAAAGCAGCT |
35.71 |
31 |
82 |
Ames |
BA2616 |
hypothetical protein |
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BA2616::70::100.0::2.5E-10::+ |
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BA2616 |
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| T3BQBC00001_A_4 |
ATGAAATGGTGCTGAATAGATTAAACGTACCGTCTTCAACAAACTGTAGGAAAACAATACTTTTATGGGA |
34.29 |
32 |
94 |
A2012 |
BXA0134 |
hypothetical protein |
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BXA0134::70::100.0::2.0E-10::+ |
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BXA0134 |
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| T3BQBC00001_A_5 |
ATGGTAGCTCGTATACATCTTATTAAATTTAAAGTGGTTATCAAGTCGAAGAAAAGGCACTCAAATGAGT |
32.86 |
30 |
86 |
A2012 |
BXA0001 |
hypothetical protein |
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BXA0001::70::100.0::2.3E-10::+ |
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BXA0001 |
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Total number of rows: 24496
Table truncated, full table size 5588 Kbytes.
| Supplementary data files not provided |
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