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Series GSE18435 Query DataSets for GSE18435
Status Public on Jan 01, 2010
Title Analysis of the role of CggR in Lactobacillus plantarum NC8 and WCFS1 by transcriptome analysis
Platform organism Lactiplantibacillus plantarum WCFS1
Sample organisms Lactiplantibacillus plantarum; Lactiplantibacillus plantarum WCFS1
Experiment type Expression profiling by array
Summary The level of the Central glycolytic gene regulator (CggR) was engineered in Lactobacillus plantarum NC8 and WCFS1 by over-expression and in-frame mutation of the cggR gene in order to evaluate its regulatory role on the glycolytic gap operon and the glyco
 
Overall design The hybridization scheme of the different strains (wild-type, cggRKO mutant, cggR+) in relation to carbon source (glucose or ribose) has a loop design.
 
Contributor(s) Rud I, Naterstad K, Bongers RS, Molenaar D, Kleerebezem M, Axelsson L
Citation(s) 21375715, 21375718
Submission date Oct 06, 2009
Last update date Feb 05, 2020
Contact name Michiel Wels
E-mail(s) michiel.wels@nizo.com
Organization name NIZO food research
Street address Kernhemseweg 2
City Ede
ZIP/Postal code 6718 ZB
Country Netherlands
 
Platforms (1)
GPL4318 WCFS Lactobacillus plantarum 11K 60-mer array, Version 1, our ID LPAG1
Samples (28)
GSM459411 NC8_cggR+ (glc) vs Wt (glc)
GSM459412 NC8_Wt (glc) vs cggRKO (glc)
GSM459413 NC8_cggRKO (glc) vs cggRKO (glc)
Relations
BioProject PRJNA118237

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18435_RAW.tar 50.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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