|
| Status |
Public on Feb 06, 2010 |
| Title |
Strains of increasing genetic divergence to the reference strain |
| Platform organism |
Burkholderia cenocepacia |
| Sample organisms |
Burkholderia cenocepacia J2315; Paraburkholderia xenovorans LB400; Burkholderia vietnamiensis G4; Burkholderia cenocepacia HI2424; Burkholderia ambifaria AMMD; Burkholderia orbicola |
| Experiment type |
Genome variation profiling by array
|
| Summary |
comparative genomic hybridization between Burkholderia cepacia sequenced strains to determine what are the limits to strain relativity in order to still provide accurate estimations of gene content
|
| |
|
| Overall design |
Two color experiment, Burkholderia cenocepacia J2315 (reference), B. cenocepacia AU1054 (tester), HI2424 (tester), B. ambifaria AMMD (tester), B. vietnamiensis G4 (tester), B. xenovorans LB400 (tester): At least two replicates including a single dye swap for each reference-tester comparison
|
| |
|
| Contributor(s) |
Oh S, Yoder-Himes DR, Tiedje J, Konstantinidis KT |
| Citation(s) |
20228107 |
| Submission date |
Jan 29, 2010 |
| Last update date |
Mar 22, 2012 |
| Contact name |
Deborah R. Yoder-Himes |
| Organization name |
Harvard Medical School
|
| Department |
Microbiology and Molecular Genetics
|
| Lab |
Lory Lab
|
| Street address |
77 Louis Pasteur Ave, 1038 NRB
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9990 |
Agilent Burkholderia cenocepacia 11K |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA124269 |
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