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| Status |
Public on Jun 27, 2011 |
| Title |
Sulfolobus solfataricus P2 growth curve, tiling arrays |
| Organism |
Saccharolobus solfataricus P2 |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
Experimentally mapped transcriptome structure of Sulfolobus solfataricus P2 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 25 nt).
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| Overall design |
Sulfolobus solfataricus P2 growth curve experiments were conducted in batch culture. Reference samples were cultured at mid-log phase (OD600 = 0.312).
Eight samples were collected that spanned the key phases of the growth curve. Total RNA from samples of growth curve and reference were directly labeled with Cy3 or Cy5, and were hybridized to the tiling array. Dye-flip experiments were done for each sample. Log ratios were calculated for each probe (growth curve sample/reference). Transcriptome browser is available at http://baliga.systemsbiology.net/enigma/.
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| Web link |
http://baliga.systemsbiology.net/enigma/
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| Contributor(s) |
Yoon S, Reiss DJ, Bare JC, Pan M, Barnebey A, Yannone SM, Baliga NS |
| Citation(s) |
21750103 |
| Submission date |
Jan 20, 2011 |
| Last update date |
Mar 23, 2012 |
| Contact name |
Sung Ho Yoon |
| Organization name |
Konkuk University
|
| Department |
Department of Bioscience and Biotechnology
|
| Street address |
120 Neungdong-ro, Gwangjin-gu
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| City |
Seoul |
| ZIP/Postal code |
05029 |
| Country |
South Korea |
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| Platforms (1) |
| GPL11623 |
Agilent-023310 ISB Sulfolobus 244K 60mer tiling array |
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| Samples (16)
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| GSM658906 |
Sulfolobus solfataricus P2 growth curve. Array 252331010001 |
| GSM658907 |
Sulfolobus solfataricus P2 growth curve. Array 252331010018 |
| GSM658908 |
Sulfolobus solfataricus P2 growth curve. Array 252331010003 |
| GSM658909 |
Sulfolobus solfataricus P2 growth curve. Array 252331010004 |
| GSM658910 |
Sulfolobus solfataricus P2 growth curve. Array 252331010005 |
| GSM658933 |
Sulfolobus solfataricus P2 growth curve. Array 252331010006 |
| GSM658940 |
Sulfolobus solfataricus P2 growth curve. Array 252331010007 |
| GSM658942 |
Sulfolobus solfataricus P2 growth curve. Array 252331010008 |
| GSM658944 |
Sulfolobus solfataricus P2 growth curve. Array 252331010009 |
| GSM658946 |
Sulfolobus solfataricus P2 growth curve. Array 252331010010 |
| GSM658949 |
Sulfolobus solfataricus P2 growth curve. Array 252331010011 |
| GSM658953 |
Sulfolobus solfataricus P2 growth curve. Array 252331010012 |
| GSM658964 |
Sulfolobus solfataricus P2 growth curve. Array 252331010013 |
| GSM658967 |
Sulfolobus solfataricus P2 growth curve. Array 252331010015 |
| GSM658971 |
Sulfolobus solfataricus P2 growth curve. Array 252331010016 |
| GSM658976 |
Sulfolobus solfataricus P2 growth curve. Array 252331010017 |
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| This SubSeries is part of SuperSeries: |
| GSE26782 |
Parallel evolution of transcriptome structure during genome reorganization |
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| Relations |
| BioProject |
PRJNA142121 |
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