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| Status |
Public on Jun 10, 2012 |
| Title |
Comparing two transcriptome technologies - sequencing match microarrays [RNA-Seq] |
| Organism |
Streptococcus thermophilus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Next-generation sequencing has emerged as a promising platform for whole genome transcriptome profiling. The microarray technology has in contrast a long track record, but may suffer from issues related to background fluorescence and non-specific hybridization. The two technologies have been compared for eukaryotic transcriptomes in various studies. However, for prokaryotes information on comparative performance of the two technologies is sparse. We thus compared the two technologies for Streptococcus thermophilus. With just single experiments there was a strong correlation between the technologies.
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| |
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| Overall design |
Two samples were analyzed
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| |
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| Contributor(s) |
Rasmussen TB, Dantoft SH, Pedersen MB |
| Citation missing |
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| Submission date |
Dec 15, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Martin Bastian Pedersen |
| E-mail(s) |
martinbastianpedersen@gmail.com
|
| Organization name |
Sacco Srl
|
| Department |
R&D
|
| Street address |
Via Manzoni 29
|
| City |
Cadorago |
| State/province |
CO |
| ZIP/Postal code |
IT-22071 |
| Country |
Italy |
| |
|
| Platforms (1) |
| GPL15021 |
Illumina HiSeq 2000 (Streptococcus thermophilus) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE34478 |
Comparing two transcriptome technologies - sequencing match microarrays |
|
| Relations |
| SRA |
SRP009851 |
| BioProject |
PRJNA156343 |
