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| Status |
Public on May 30, 2014 |
| Title |
Identification of Gram-positive bacteria using BC-GP assay |
| Platform organisms |
Micrococcus; Staphylococcus; Staphylococcus aureus; Staphylococcus epidermidis; Streptococcus; Streptococcus agalactiae; Streptococcus pneumoniae; Streptococcus pyogenes; Enterococcus faecalis; Enterococcus faecium; Listeria; Staphylococcus lugdunensis; Streptococcus anginosus group |
| Sample organisms |
Escherichia coli; Klebsiella pneumoniae; Leuconostoc lactis; Micrococcus luteus; Staphylococcus aureus; Staphylococcus epidermidis; Staphylococcus haemolyticus; Staphylococcus simulans; Staphylococcus hominis; Streptococcus gordonii; Streptococcus salivarius; Streptococcus thermophilus; Streptococcus agalactiae; Streptococcus pneumoniae; Streptococcus pyogenes; Streptococcus parasanguinis; Streptococcus anginosus; Streptococcus dysgalactiae; Enterococcus faecalis; Enterococcus faecium; Enterococcus gallinarum; Bacillus licheniformis; Listeria monocytogenes; Staphylococcus lugdunensis; Streptococcus mitis; Staphylococcus caprae; Staphylococcus saprophyticus; Staphylococcus capitis; Corynebacterium afermentans; Corynebacterium striatum; Streptococcus constellatus; Streptococcus australis; Streptococcus gallolyticus |
| Experiment type |
Other
|
| Summary |
Signal intensities of BC-GP array for 105 speimens
The Verigene Gram-Positive Blood Culture (BC-GP) nucleic acid assay is an automated microarray-based test, which can detect 12 Gram-positive bacterial genes and 3 resistance determinants using blood culture broths. We investigated signal intensities of microarray spots, and reclassified undetermined results where the automated system failed and various errors were called in blood culture specimens and spiked samples.
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| Overall design |
Signal intensity analysis of BC-GP assay.
SAMPLE_077 [Blood culture, Escherichia coli, Gram-negative, BacTALERT, Supernatant, Peripheral blood] had no signal data in the array raw data. Thus, SAMPLE_077 is not represented in this Series.
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| Contributor(s) |
Kim S, Park K |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 02, 2014 |
| Last update date |
May 30, 2014 |
| Contact name |
Seon Young Kim |
| Organization name |
Seoul National University College of Medicine
|
| Street address |
101 Daehak-ro, Jongno-gu,
|
| City |
Seoul |
| ZIP/Postal code |
110-744 |
| Country |
South Korea |
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| Platforms (1) |
| GPL18634 |
Nanosphere Verigene Gram-Positive Blood Culture Nucleic Acid Assay Microarray |
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| Samples (104)
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| Relations |
| BioProject |
PRJNA246048 |
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