|
| Status |
Public on Dec 07, 2016 |
| Title |
Adaptation of Propionibacterium freudenreichii to long-term survival under gradual nutritional shortage |
| Organism |
Propionibacterium freudenreichii |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Propionibacterium freudenreichii CIRM-BIA138 was grown for 11 days in YEL medium at 30°C without any addition of nutrients. RNA was extracted from bacteria harvested 24 H post-inoculation (exponential phase) and 72 H post-inoculation and was depleted from ribosmic sequences. RNA samples were sequenced on Hiseq 2000 generating single reads of 50 bp.
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| |
|
| Overall design |
Comparison of genes expressed in stationary growth phase (biological triplicate) in a context of nutritional shortage with those expressed in exponential growth phase (biological triplicate).
|
| |
|
| Contributor(s) |
Aburjaile F, Falentin H |
| Citation(s) |
27931189 |
| Submission date |
Dec 01, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Hélène Falentin |
| E-mail(s) |
helene.falentin@rennes.inra.fr
|
| Organization name |
INRA
|
| Department |
Microbiologie
|
| Lab |
UMR STLO
|
| Street address |
65 rue de St Brieuc
|
| City |
Rennes |
| ZIP/Postal code |
35042 |
| Country |
France |
| |
|
| Platforms (1) |
| GPL21193 |
Illumina HiSeq 2000 (Propionibacterium freudenreichii) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA304515 |
| SRA |
SRP066840 |
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