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Series GSE84949 Query DataSets for GSE84949
Status Public on Dec 10, 2017
Title Expression data from distal ileum of mice administered lactic acid bacteria, Lactococcus lactis C59 and Lactobacillus rhamnosus GG
Organism Mus musculus
Experiment type Expression profiling by array
Summary This study aimed to investigate the effects of oral administration of lactic acid bacteria (LAB) on gene expression in murine ileum.
To evaluate the strain specific and dose effects of LAB on the gene expression of distal ileum, Lactococcus lactis C59 and Lactobacillus rhamnosus GG were administered at a dose of 1 x 107 cells (10^7), 1 x 108 (10^8) cells or 1 x 109 (10^9) cells
Microarray analysis was performed using total RNA from distal ileum to detail the gene expression of 7 groups; control, C59- and GG-administered at a dose of 1 x 107 cells (10^7), 1 x 108 (10^8) cells or 1 x 109 (10^9) cells.
Gene expression patterns were clustered by administered strains.
Several genes involved in immune system are up-regulated in the lower intestine in the presence of GG and down-regulated in the presence of C59.
 
Overall design Balb/c mice (male, 7 week-old, n=6) in each group received 0.2ml (1 x 109 cells) of strain C59 or strain GG suspension for 2 weeks.
 
Contributor(s) Suzuki C, Aoki-Yoshida A, Aoki R, Mizumachi K
Citation(s) 29220366
Submission date Jul 28, 2016
Last update date Feb 11, 2019
Contact name Chise Suzuki
Organization name NARO Institute of Livestock and Grassland Science
Department Animal Products Res. Division
Lab Functional Biomolecules Res. Group
Street address 2 Ikenodai
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-0901
Country Japan
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (35)
GSM2254550 distal_ileum_PBS-administered_rep1
GSM2254551 distal_ileum_PBS-administered_rep2
GSM2254552 distal_ileum_PBS-administered_rep3
Relations
BioProject PRJNA335735

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE84949_RAW.tar 126.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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