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Series GSE97500 Query DataSets for GSE97500
Status Public on May 11, 2018
Title Fine scale time-series RNA-Seq of shoot and root responses to Nitrogen supply
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Arabidopsis plants grown in a hydroponic media with sufficient Nitrogen were given a 60mM supply of Nitrogen. Triplicate sets of plants were sampled at time points 0,5,10,15,20,30,45,60,90 and 120 minutes after supply from treated and control plants (20mM KCl). The samples were flash frozen in liquid N and used to construct RNA-Seq libraries to assay transcriptional changes in the shoots and roots, separately, in response to Nitrogen.
 
Overall design Time series of shoot and root mRNA profiles from Root and shoot were generated at 10 time points after Nirogen supply using Illumina HiSeq platform.
 
Contributor(s) Marshall-Colon A, Varala K, Coruzzi G
Citation(s) 29769331, 33693548
Submission date Apr 07, 2017
Last update date Apr 26, 2021
Contact name Kranthi Varala
Organization name Purdue University
Department Horticulture and Landscape Architecture
Street address 625 Agriculture Mall Drive
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (114)
GSM2570302 S0-1
GSM2570303 S0-2
GSM2570304 S0-3
Relations
BioProject PRJNA382136
SRA SRP103736

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97500_RAW.tar 12.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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