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Status
Public on Nov 01, 2011
Title
Mm mono-culture + hydrogen-limited FC45 FC46 FC50 gSet2
Sample type
RNA
Source name
Mm mono-culture + hydrogen-limited FC45 FC46 FC50 gSet2
Organism
Methanococcus maripaludis S2 Characteristics
strain: S2
Biomaterial provider
U. of Washington (Chris Walker)
Treatment protocol
Walker et al., 2009. Jbact. 191, 5793-5801.
Growth protocol
Walker et al., 2009. Jbact. 191, 5793-5801.
Extracted molecule
total RNA
Extraction protocol
Walker et al., 2009. Jbact. 191, 5793-5801.
Label
Cy5
Label protocol
He, Z., Wu, L., Li, X., Fields, M., and Zhou, J. 2005. Empirical Establishment of Oligonucleotide Probe Design Criteria. Appl. Environ. Microbiol. 71:3753-3760.
Hybridization protocol
He, Z., Wu, L., Li, X., Fields, M., and Zhou, J. 2005. Empirical Establishment of Oligonucleotide Probe Design Criteria. Appl. Environ. Microbiol. 71:3753-3760.
Scan protocol
ImaGene software
Description
Syntrophically grown Desulfovibrio vulgaris and Methanococcus maripaludis compared against hydrogen-limited Methanococcus maripaludis
Data processing
See Methods in: S. R. Chhabra, Q. He, K. H. Huang, S. P. Gaucher, E. J. Alm, Z. He, M. Z. Hadi, T. C. Hazen, J. D. Wall, J. Zhou, A. . Arkin, and A. K. Singh, Global Analysis of Heat Shock Response in Desulfovibrio vulgaris Hildenborough, J Bacteriol. 2006 March; 188(5): 1817-1828. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=16484192
Submission date
Jul 20, 2011
Last update date
Nov 01, 2011
Contact name
Adam P. Arkin
E-mail(s)
mjoachimiak@lbl.gov Phone
(510) 495-2366
Fax
(510) 486-6219
URL
http://vimss.lbl.gov Organization name
Virtual Institute for Microbial Stress and Survival
Department
Physical Biosciences Division
Lab
Lawrence Berkeley National Laboratory
Street address
1 Cyclotron Road
City
Berkeley
State/province
CA
ZIP/Postal code
94720
Country
USA
Platform ID
GPL13958 Series (1)
GSE30831 Coculture of Desulfovibrio vulgaris Hildenborough and Methanococcus maripaludis
Data table header descriptions ID_REF reference to ID field in platform
VALUE mean log2 value of expression across 13 replicates (3 biological replicates X (4 or 5) technical replicates)
Data table ID_REF VALUE 532172
-10.0361409187317
532173
-11.8542857170105
532174
-12.0089349746704
532175
-12.9469499588013
532176
-13.0272808074951
532177
-11.2234959602356
532178
-12.4486360549927
532179
-13.4852538108826
532180
-13.6833190917969
532181
-11.9578037261963
532182
-14.8365616798401
532183
-12.8307447433472
532184
-12.749888420105
532185
-12.7253613471985
532186
-13.0513229370117
532187
-12.4687457084656
532188
-12.2466611862183
532189
-14.0295310020447
532190
-13.7865653038025
532191
-11.3873000144958
1709 41 Kbytes .Supplementary file Size Download File type/resource GSM764979_bio1_tech1.txt.gz
998.7 Kb
(ftp) (http) TXT
GSM764979_bio1_tech2.txt.gz
998.6 Kb
(ftp) (http) TXT
GSM764979_bio1_tech3.txt.gz
983.9 Kb
(ftp) (http) TXT
GSM764979_bio1_tech4.txt.gz
995.9 Kb
(ftp) (http) TXT
GSM764979_bio2_tech1.txt.gz
993.3 Kb
(ftp) (http) TXT
GSM764979_bio2_tech2.txt.gz
1001.7 Kb
(ftp) (http) TXT
GSM764979_bio2_tech3.txt.gz
1000.7 Kb
(ftp) (http) TXT
GSM764979_bio2_tech4.txt.gz
992.7 Kb
(ftp) (http) TXT
GSM764979_bio3_tech1.txt.gz
1.0 Mb
(ftp) (http) TXT
GSM764979_bio3_tech2.txt.gz
1.0 Mb
(ftp) (http) TXT
GSM764979_bio3_tech3.txt.gz
1021.4 Kb
(ftp) (http) TXT
GSM764979_bio3_tech4.txt.gz
1023.5 Kb
(ftp) (http) TXT
GSM764979_bio3_tech5.txt.gz
1019.0 Kb
(ftp) (http) TXT
Processed data included within Sample table
