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Platform GPL19701 Query DataSets for GPL19701
Status Public on Feb 28, 2015
Title PEPperCHIP Autoimmunity Microarray 2.0
Technology type spotted peptide or protein
Distribution custom-commercial
Organisms Helicobacter pylori; Escherichia coli; Klebsiella pneumoniae; Proteus mirabilis; Shigella flexneri; Yersinia enterocolitica; Haemophilus influenzae; Chlamydia trachomatis; Porphyromonas gingivalis; Staphylococcus aureus; Streptococcus pyogenes; Lactobacillus delbrueckii subsp. bulgaricus; Mycobacterium avium; Mycobacterium tuberculosis variant bovis; Mycobacterium avium subsp. paratuberculosis; Mycobacterium tuberculosis; Mycobacterium gordonae; Trypanosoma cruzi; Homo sapiens; Mus musculus; Human alphaherpesvirus 1; Human alphaherpesvirus 2; Human betaherpesvirus 5; Human betaherpesvirus 6; human gammaherpesvirus 4; Human herpesvirus 4 strain B95-8; Hepatitis C virus isolate HC-J6; Human immunodeficiency virus 1; Human T-cell leukemia virus type I; Human T-cell lymphotrophic virus type 1 (isolate MT-2); Coxsackievirus A9; Coxsackievirus B4; Human herpesvirus 4 type 2; Human adenovirus 12; Human herpesvirus 4 type 1; Coxsackievirus A20; Human endogenous retrovirus K; Human Endogenous Retrovirus IDDMK1,2-22; Torque teno virus; Chlamydia pneumoniae; Prochlorococcus marinus str. MIT 9202; Human rotavirus MP409; Coxsackievirus B4 (strain E2); Paraburkholderia fungorum; Porphyromonas gingivalis W83; Mycobacterium avium subsp. paratuberculosis K-10; Human poliovirus 3 strain Sabin; Staphylococcus aureus A9635; Betapolyomavirus macacae; Hepacivirus hominis
Manufacturer PEPperPRINT
Manufacture protocol Amino acid microparticles are laser printed onto a glass slide with a custom 24-color laser printer. One layer of an amino acid particle pattern is printed on a coated glass slide. A heating step melts the particles. Embedded amino acids can couple to the chip surface. In accordance with solid phase Fmoc chemistry, a cycle of synthesis is completed after removal of excessive material by washing and cleavage of the N-terminal Fmoc protection group. The cycle is repeated until the full peptide microarray is synthesized.
 
Description Laser printer spotted peptides
 
Submission date Jan 26, 2015
Last update date Feb 28, 2015
Contact name Jennie Hamilton
Organization name University of Alabama Birmingham
Department Department of Medicine, Division of Clinical Immunology and Rheumatology
Street address 1825 University Blvd.
City Birmingham
State/province AL
ZIP/Postal code 35294
Country USA
 
Samples (4) GSM1591570, GSM1591571, GSM1591572, GSM1591573
Series (3)
GSE65277 Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0
GSE65278 Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0
GSE65290 General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice

Data table header descriptions
ID
Row Position on array
Column Position on array
SEQUENCE Peptide amino acid sequence
Epitope ID IEDB peptide accession number
Source Molecule Accession Source molecule accession number
Source Molecule Name Peptide source antigen name
Source Organism ID Peptide source organism ID (Taxon Identifier)
Source Organism Name Peptide source organism genus/species

Data table
ID Row Column SEQUENCE Epitope ID Source Molecule Accession Source Molecule Name Source Organism ID Source Organism Name
LSRFSWGAEGQKPGFGY_47_38 47 38 LSRFSWGAEGQKPGFGY 112803 387414 18.5 kd myelin basic protein 10090 Mus musculus
RFSWGAEGQKPGFGYGG_47_39 47 39 RFSWGAEGQKPGFGYGG 112803 387414 18.5 kd myelin basic protein 10090 Mus musculus
AASGPKVVIDGKDQNVT_29_14 29 14 AASGPKVVIDGKDQNVT 433 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
ATGVDMANPMSPVNKSF_31_26 31 26 ATGVDMANPMSPVNKSF 4990 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
GGAATGIAAVLTDGNPP_35_49 35 49 GGAATGIAAVLTDGNPP 25315 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
GLTVAVAGAAILVAGLS_39_27 39 27 GLTVAVAGAAILVAGLS 105967 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
GPKVVIDGKDQNVTGSV_29_15 29 15 GPKVVIDGKDQNVTGSV 433 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
IAIGGAATGIAAVLTDG_35_48 35 48 IAIGGAATGIAAVLTDG 25315 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
LSGCSSNKSTTGSGETT_43_65 43 65 LSGCSSNKSTTGSGETT 67607 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
MKRGLTVAVAGAAILVA_39_26 39 26 MKRGLTVAVAGAAILVA 105967 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
MSPVNKSFEIEVTCS_73_56 73 56 MSPVNKSFEIEVTCS 42633 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
VAGLSGCSSNKSTTGSG_43_64 43 64 VAGLSGCSSNKSTTGSG 67607 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
VDMANPMSPVNKSFEIE_31_27 31 27 VDMANPMSPVNKSFEIE 4990 15610899 19 KDA LIPOPROTEIN ANTIGEN PRECURSOR LPQH 1773 Mycobacterium tuberculosis
GAEGHWRRLP_99_36 99 36 GAEGHWRRLP 167581 129034 2-oxoisovalerate dehydrogenase subunit beta mitochondrial 9606 Homo sapiens
AEFVQQKNFLVEEEQRQ_27_63 27 63 AEFVQQKNFLVEEEQRQ 118155 133250 52 kDa Ro protein 9606 Homo sapiens
CQVGIFLDYEAGMVS_59_55 59 55 CQVGIFLDYEAGMVS 170490 133250 52 kDa Ro protein 9606 Homo sapiens
FLLSSKSGFWTIWLW_63_59 63 59 FLLSSKSGFWTIWLW 171063 133250 52 kDa Ro protein 9606 Homo sapiens
FWTIWLWNKQKYEAG_65_7 65 7 FWTIWLWNKQKYEAG 171113 133250 52 kDa Ro protein 9606 Homo sapiens
GAQHFHSGKHYWEVD_65_8 65 8 GAQHFHSGKHYWEVD 171126 133250 52 kDa Ro protein 9606 Homo sapiens
IFLDYEAGMVSFYNI_67_70 67 70 IFLDYEAGMVSFYNI 171474 133250 52 kDa Ro protein 9606 Homo sapiens

Total number of rows: 4389

Table truncated, full table size 433 Kbytes.




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