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Series GSE190571 Query DataSets for GSE190571
Status Public on Dec 11, 2021
Title RNAseq of polymicrobial S.aureus and E.coli macrocolonies
Organisms Escherichia coli; Staphylococcus aureus
Experiment type Expression profiling by high throughput sequencing
Summary We report the transcriptome of macrocolonies taken from S. aureus and E. coli grown in single speicies or multispecies context.
 
Overall design Examination of 2 different bacterial species macrocolonies
 
Contributor(s) Chong K, Jie WJ, Ho B, Kline K
Citation(s) 36067266
Submission date Dec 09, 2021
Last update date Sep 27, 2022
Contact name Kelvin Chong
E-mail(s) ch0030in@e.ntu.edu.sg
Organization name Nanyang Technological University
Department SCELSE
Street address 60 Nanyang Drive
City Singapore
ZIP/Postal code S637551
Country Singapore
 
Platforms (3)
GPL18133 Illumina HiSeq 2500 (Escherichia coli)
GPL19006 Illumina HiSeq 2500 (Staphylococcus aureus)
GPL31054 Illumina HiSeq 2500 (Escherichia coli; Staphylococcus aureus)
Samples (8)
GSM5725842 UTI89-rep1
GSM5725843 UTI89-rep2
GSM5725844 HG001-rep1
Relations
BioProject PRJNA787579
SRA SRP350040

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE190571_HG001_Mixed_comparison.txt.gz 137.6 Kb (ftp)(http) TXT
GSE190571_HG001_raw_counts.txt.gz 18.4 Kb (ftp)(http) TXT
GSE190571_Mixed_HG001_raw_counts.txt.gz 15.6 Kb (ftp)(http) TXT
GSE190571_Mixed_UTI89_raw_counts.txt.gz 24.0 Kb (ftp)(http) TXT
GSE190571_UTI89_Mixed_comparison.txt.gz 236.6 Kb (ftp)(http) TXT
GSE190571_UTI89_raw_counts.txt.gz 24.4 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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