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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 02, 2014 |
| Title |
Illumina HiSeq 2500 (Escherichia coli) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Escherichia coli |
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| Submission date |
Jan 02, 2014 |
| Last update date |
Jan 07, 2019 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1300)
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GSM1300280, GSM1300281, GSM1696177, GSM1696178, GSM1696179, GSM1696180
GSM1696181, GSM1696182, GSM1808180, GSM1808181, GSM1808182, GSM1808183, GSM1808184, GSM1808185, GSM1831773, GSM1831774, GSM1831775, GSM1831776, GSM1838496, GSM1838497, GSM1838498, GSM1838499, GSM1838500, GSM1838501, GSM1838502, GSM1838503, GSM1838504, GSM1838505, GSM1838506, GSM1838507, GSM1838508, GSM1838509, GSM1838510, GSM1838511, GSM1838512, GSM1838513, GSM1912879, GSM1912880, GSM1912881, GSM1912882, GSM1975603, GSM1975604, GSM1975605, GSM1975606, GSM1975607, GSM1975608, GSM2190859, GSM2190860, GSM2190861, GSM2190862, GSM2190863, GSM2190864, GSM2190865, GSM2190866, GSM2190867, GSM2190868, GSM2190869, GSM2190870, GSM2190871, GSM2190872, GSM2190873, GSM2190874, GSM2190875, GSM2190876, GSM2190877, GSM2190878, GSM2190879, GSM2276800, GSM2276801, GSM2276802, GSM2276803, GSM2276804, GSM2276805, GSM2276806, GSM2276807, GSM2276808, GSM2287241, GSM2287242, GSM2287243, GSM2287244, GSM2287245, GSM2287246, GSM2287247, GSM2287248, GSM2287249, GSM2287250, GSM2287251, GSM2287252, GSM2287253, GSM2287254, GSM2287255, GSM2287256, GSM2287257, GSM2287258, GSM2287259, GSM2287260, GSM2287261, GSM2287262, GSM2287263, GSM2287264, GSM2287265, GSM2287266, GSM2287267, GSM2287268, GSM2287269, GSM2287270, GSM2287271, GSM2287272, GSM2287273, GSM2287274, GSM2287275, GSM2287276, GSM2287277, GSM2287278, GSM2287279, GSM2287280, GSM2287281, GSM2287282, GSM2287283, GSM2287284, GSM2287285, GSM2287286, GSM2287287, GSM2287288, GSM2287289, GSM2287290, GSM2287291, GSM2287292, GSM2287293, GSM2287294, GSM2287295, GSM2287296, GSM2287297, GSM2305305, GSM2305306, GSM2305307, GSM2339192, GSM2339193, GSM2349915, GSM2349916, GSM2349917, GSM2349918, GSM2349919, GSM2349920, GSM2349921, GSM2349922, GSM2349923, GSM2349924, GSM2349925, GSM2349926, GSM2349927, GSM2349928, GSM2349929, GSM2349930, GSM2411669, GSM2411670, GSM2411671, GSM2411672, GSM2411673, GSM2411674, GSM2411675, GSM2411676, GSM2411677, GSM2411678, GSM2411679, GSM2411680, GSM2411681, GSM2411682, GSM2411683, GSM2411684, GSM2411685, GSM2411686, GSM2411687, GSM2411688, GSM2411689, GSM2411690, GSM2411691, GSM2411692, GSM2411693, GSM2411694, GSM2411695, GSM2411696, GSM2411697, GSM2411698, GSM2411699, GSM2411700, GSM2411701, GSM2411702, GSM2411703, GSM2411704, GSM2411705, GSM2411706, GSM2411707, GSM2411708, GSM2411709, GSM2411710, GSM2411711, GSM2411712, GSM2411713, GSM2411714, GSM2411715, GSM2411716, GSM2411717, GSM2411718, GSM2411719, GSM2411720, GSM2411721, GSM2411722, GSM2411723, GSM2411724, GSM2411725, GSM2411726, GSM2411727, GSM2436619, GSM2436620, GSM2436621, GSM2436622, GSM2436623, GSM2436624, GSM2436625, GSM2445135, GSM2445138, GSM2445140, GSM2445142, GSM2445144, GSM2445145, GSM2445147, GSM2445149, GSM2445151, GSM2445153, GSM2445155, GSM2445157, GSM2445159, GSM2445161, GSM2507165, GSM2507166, GSM2507167, GSM2507168, GSM2507169, GSM2507170, GSM2507171, GSM2507172, GSM2507173, GSM2507174, GSM2507175, GSM2507176, GSM2507177, GSM2507178, GSM2507179, GSM2675514, GSM2675515, GSM2675516, GSM2675517, GSM2675518, GSM2675519, GSM2675520, GSM2675521, GSM2675522, GSM2675523, GSM2675524, GSM2675525, GSM2675526, GSM2675527, GSM2693960, GSM2693961, GSM2757255, GSM2757256, GSM2757257, GSM2757258, GSM2757259, GSM2757260, GSM2757261, GSM2757262, GSM2757263, GSM2757264, GSM2757265, GSM2757266, GSM2757267, GSM2757268, GSM2757269, GSM2757270, GSM2757271, GSM2757272, GSM2757273, GSM2770905, GSM2770906, GSM2770907, GSM2770908, GSM2770909, GSM2770910, GSM2779909, GSM2779910, GSM2779911, GSM2779912, GSM2779913, GSM2779914, GSM2861127, GSM2861128, GSM2861129, GSM2861130, GSM2861131, GSM2861132, GSM2861133, GSM2861134, GSM2861135, GSM2861136, GSM2861137, GSM2861138, GSM2861139, GSM2861140, GSM2861141, GSM2861142, GSM2861143, GSM2861144, GSM2861145, GSM2861146, GSM2861147, GSM2861148, GSM2861149, GSM2861150, GSM2861151, GSM2861152, GSM2861153, GSM2861154, GSM2861155, GSM2861156, GSM2861157, GSM2861158, GSM2861159, GSM2861160, GSM2861161, GSM2861162, GSM2861163, GSM2861164, GSM2861165, GSM2861166, GSM2861167, GSM2861168, GSM2861169, GSM2861170, GSM2861171, GSM2861172, GSM2861173, GSM2861174, GSM2861175, GSM2861176, GSM2861177, GSM2861178, GSM2861179, GSM2861180, GSM2861181, GSM2861182, GSM2861183, GSM2861184, GSM2861185, GSM2861186, GSM2861187, GSM2861188, GSM2861189, GSM2861190, GSM2861191, GSM2861192, GSM2861193, GSM2861194, GSM2861195, GSM2861196, GSM2861197, GSM2861198, GSM2861199, GSM2861200, GSM2861201, GSM2861202, GSM2861203, GSM2861204, GSM2861205, GSM2861206, GSM2861207, GSM2861208, GSM2861209, GSM2861210, GSM2861211, GSM2861212, GSM2861213, GSM2861214, GSM2861215, GSM2861216, GSM2898205, GSM2898206, GSM2898207, GSM2898208, GSM2898209, GSM2898210, GSM2898211, GSM2898212, GSM2898213, GSM2902862, GSM2902863, GSM2902864, GSM2902865, GSM2902868, GSM2902869, GSM2902870, GSM2902871, GSM2970396, GSM2970397, GSM2970398, GSM2970399, GSM2970400, GSM2970401, GSM2973653, GSM2973654, GSM2973655, GSM2973656, GSM2973657, GSM2973658, GSM2973659, GSM2973660, GSM2983261, GSM2983262, GSM2983263, GSM2983264, GSM2983265, GSM2983266, GSM2983267, GSM2983268, GSM2983269, GSM2983270, GSM2983271, GSM2983272, GSM2983273, GSM2983274, GSM2983275, GSM2983276, GSM2983277, GSM2983278, GSM3003543, GSM3003544, GSM3017896, GSM3017898, GSM3019445, GSM3019446, GSM3019447, GSM3019448, GSM3029698, GSM3029699, GSM3070009, GSM3070010, GSM3070011, GSM3070012, GSM3070013, GSM3070014, GSM3070015, GSM3070016, GSM3070017, GSM3070018, GSM3070019, GSM3070020, GSM3070021, GSM3070022, GSM3070023, GSM3070024, GSM3070025, GSM3070026, GSM3070027, GSM3070028, GSM3070029, GSM3070030, GSM3070031, GSM3070032, GSM3070033, GSM3070034, GSM3070035, GSM3070036, GSM3070037, GSM3070038, GSM3070039, GSM3070040, GSM3070041, GSM3070042, GSM3070043, GSM3070044, GSM3070045, GSM3070046, GSM3070047, GSM3070048, GSM3070049, GSM3070050, GSM3070051, GSM3070052, GSM3070053, GSM3070054, GSM3070055, GSM3070056, GSM3070057, GSM3070058, GSM3070059, GSM3070060, GSM3070061, GSM3070062, GSM3070063...
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| Series (99)
|
| GSE53767 |
Absolute quantification of protein production reveals principles underlying protein synthesis rates |
| GSE69250 |
Condensin mediates the chromosomal clustering of highly transcribed genes in bacteria |
| GSE70507 |
Transcriptome analysis using RNA-Seq reveals complex acid responsive mechanisms in 3-hydroxypropionic aicd producing strains of E. coli |
| GSE71279 |
Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions |
| GSE71562 |
RNA-Seq of Escherichia coli after anaerobic-aerobic transition |
| GSE74184 |
Methylome analysis of deoxyadenosines in higher eukaryotes |
| GSE76167 |
Mechanisms of nickel toxicity in bacteria |
| GSE82341 |
A Molecular Genetic Basis Explaining Altered Bacterial Behavior in Space |
| GSE85540 |
A ribosome profiling study of mRNA cleavage by the endonuclease RelE |
| GSE85914 |
Measuring gene expression profiles of E. coli synthetic rescue strains |
| GSE86536 |
Context-specific inhibition of translation by ribosomal antibiotics targeting the peptidyl transferase center |
| GSE87711 |
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits [MPRA] |
| GSE87712 |
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits |
| GSE88835 |
Genetic circuit 0x58 |
| GSE90743 |
RNA-seq of Escherichia coli under fluctuating ammonia availability (limitation-depletion) |
| GSE92734 |
Genome-wide Transcription-coupled Repair in E.coli is Mediated by the Mfd Protein |
| GSE93125 |
Transcriptomal changes of Escherichia coli TolC grown with the biofilm inhibitor Carolacton |
| GSE95318 |
RNA-sequencing identifies new RNase III cleavage sites in E. coli and reveals increased regulation of mRNA |
| GSE98890 |
Genetic circuit 0x58 replicates and modified |
| GSE100233 |
Permissive zones for the centromere-binding protein ParB on the Caulobacter crescentus chromosome |
| GSE100817 |
Division-induced DNA double strand breaks in the chromosome terminus region of Escherichia coli lacking RecBCD DNA repair enzyme |
| GSE103415 |
Metabolome and transcriptome-wide effects of the carbon storage regulator A in enteropathogenic Escherichia coli. |
| GSE103732 |
Effects of temperature on specificity and efficiency of a bacterial regulatory RNA |
| GSE107093 |
Burden- driven feedback control of gene expression |
| GSE108442 |
Genome Engineering for Enhancing Recombinant Protein Expression in E.coli |
| GSE108535 |
Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli |
| GSE109819 |
Transcriptome analysis of Escherichia coli strains producing exogenous internal membrane proteins |
| GSE109907 |
Potassium tellurite exerts its toxicity on ribosome in Escherichia coli |
| GSE110255 |
Sulfamethoxazole – Trimethoprim represses csgD but 2 maintains virulence genes at 30°C in a clinical 3 Escherichia coli O157:H7 isolate |
| GSE110582 |
Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq |
| GSE110854 |
Profile of mRNA transcriptomes of E. coli affected by antifungal agent ciclopirox |
| GSE110956 |
Kinetically controlled competition between NusA and σ70 yields functionally diverse transcription elongation complexes |
| GSE111370 |
RNA sequencing to identify differences between two E. coli strains that respond differently to volatiles of Streptomyces sp. |
| GSE112430 |
Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing Escherichia coli |
| GSE113529 |
Assaying RNA Structure with LASER-seq |
| GSE114262 |
RNA-seq Analyzes Transcriptomes of dnaB-Ts and dnaB-Ts ΔahpC at Both Permissive and Non-permissive Temperature |
| GSE117952 |
Genomic Analysis of DNA Double-Strand Break Repair in Escherichia coli (MFA profiles) |
| GSE119046 |
Quantitative analysis of Escherichia coli sigma factor alleles wildtype rpoS, rpoS819 and rpoS92 transcriptomes in stationary-phase (16 hours) |
| GSE123554 |
Reconstruction of transcriptional regulatory networks of Fis and H-NS in Escherichia coli from genome wide data analysis |
| GSE126248 |
Transcriptome analysis of cells carrying Type II Csp231I restriction-modification (RM) system reveal the crosstalk between two unrelated transcription factors - C protein and Rac prophage repressor |
| GSE127680 |
The role of archaeal histones in gene expression - a synthetic biology perspective |
| GSE127728 |
The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog |
| GSE128997 |
Genetically diverse uropathogenic Escherichia coli adopt a common transcriptional program in patients with urinary tract infections |
| GSE129163 |
Synthetic 5’ UTRs can either up- or down-regulate expression upon RBP binding |
| GSE129285 |
Diversification of DNA-binding specificity via permissive and specificity-switching mutations in the ParB/Noc protein family |
| GSE130799 |
The role of archaeal histones in gene expression - a synthetic biology perspective [Escherichia coli RNA-seq] |
| GSE132637 |
RNAseq transcriptome analysis of K. pneumoniae MS6671 and E. coli MS8345 treated with PBT2 |
| GSE134665 |
Structural and biochemical analyses of Caulobacter crescentus ParB reveal the role of its N-terminal domain in chromosome segregation |
| GSE138044 |
Amino acid supplementation for enhancing recombinant protein production in E. coli |
| GSE138576 |
The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog (Mnase-seq and EMSA-seq) |
| GSE141883 |
RNA Sequencing of wild type and RNA polymerase mutant (rpoCA494V) strains of Escherichia coli |
| GSE143359 |
A cost effective process development for enhanced expression of antibody fragment in microbial cells, its impact on cellular physiology and transcriptome |
| GSE143554 |
Next Generation Sequencing Facilitates Quantitative Analysis of E.coli DH5a Transcriptomes under triclosan exposure |
| GSE145630 |
Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems |
| GSE145685 |
Transcription-wide distribution of dihydrouridine (D) into mRNAs reveals its requirement for meiotic chromosome segregation. [Rho-Seq] |
| GSE145686 |
Transcription-wide distribution of dihydrouridine (D) into mRNAs reveals its requirement for meiotic chromosome segregation. |
| GSE148594 |
pAgo-induced DNA interference protects bacteria from invader DNA [gDNA] |
| GSE148595 |
pAgo-induced DNA interference protects bacteria from invader DNA [smDNA] |
| GSE148596 |
pAgo-induced DNA interference protects bacteria from invader DNA |
| GSE152295 |
RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bacterial Infections |
| GSE152619 |
Transcriptome of E. coli during Long-Term Stationary Phase |
| GSE152848 |
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative |
| GSE152966 |
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Escherichia coli B36 |
| GSE152967 |
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Escherichia coli MS14384 |
| GSE152968 |
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Escherichia coli MS14387 |
| GSE152969 |
Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Escherichia coli MS14386 |
| GSE153477 |
Converting Escherichia coli to a synthetic methylotroph growing solely on methanol |
| GSE155942 |
Massively parallel identification of cis-regulatory variants in yeast promoters - Annotation runs |
| GSE155944 |
Massively parallel identification of cis-regulatory variants in yeast promoters |
| GSE157512 |
Multimodal multiscale analysis reveals flexible DNA contacts of bacterial nucleoprotein filaments |
| GSE158683 |
DeepTFactor, a deep learning-based tool for the identification of transcription factors |
| GSE165446 |
Identification and characterization of pleiotropic high-persistence mutations in the beta subunit of the bacterial RNA polymerase |
| GSE167517 |
Transcriptional-Regulatory Convergence Across Functional MDD Risk Variants Identified by Massively Parallel Reporter Assays [Expt1] |
| GSE167519 |
Transcriptional-Regulatory Convergence Across Functional MDD Risk Variants Identified by Massively Parallel Reporter Assays |
| GSE168010 |
A programmable pAgo nuclease with universal guide and target specificity from the mesophilic bacterium Kurthia massiliensis |
| GSE168968 |
A CTP-dependent gating mechanism enables ParB spreading on DNA |
| GSE174271 |
RNA-CASing |
| GSE175936 |
RNA-seq analysis of isogenic dnaN+ and dnaN-E202K E. coli strains derived from MG1655. |
| GSE181239 |
Transcriptomics data on E. coli lacking queuosine tRNA modification (tgt deficient strain) exposed or not to nickel stress. |
| GSE181770 |
A chromatin immunoprecipitation database for prokarytic organisms [fur] |
| GSE182079 |
A chromatin immunoprecipitation database for prokarytic organisms |
| GSE182100 |
Global and gene-specific translational regulation in Escherichia coli across different conditions |
| GSE183061 |
Identification of collateral RNA cleavage mediated by Type VI CRISPR-Cas system from Leptotrichia shahiii |
| GSE185572 |
Ribosome profiling reveals multiple roles of SecA in cotranslational protein export |
| GSE188790 |
Transcriptome of Aged and Unaged E. coli populations |
| GSE190571 |
RNAseq of polymicrobial S.aureus and E.coli macrocolonies |
| GSE190759 |
Mutational analysis of Rap1 reveals specific vulnerability for long telomeres fusions |
| GSE192346 |
Antibacterial mechanism of peptide Asp-Tyr-Asp-Asp based on multiomics and molecular dynamics [E. coli] |
| GSE192347 |
Antibacterial mechanism of the Asp - Asp - Asp - Tyr peptide |
| GSE199360 |
System-wide analyses reveal essential roles of N-terminal protein modification in bacterial physiology |
| GSE200694 |
Specific targeting of plasmids with Argonaute enables genome editing |
| GSE206871 |
Induction of neurons from mouse ESC by the bHLH factors Ascl1 and Ngn2 shows distinct genetic dependencies, pluripotency exit, and cell cycle shutdown. [CRISPR-UMI] |
| GSE206872 |
Induction of neurons from mouse ESC by the bHLH factors Ascl1 and Ngn2 shows distinct genetic dependencies, pluripotency exit, and cell cycle shutdown. |
| GSE206960 |
Identification of RNAs regulated by oligoribonuclease |
| GSE214592 |
Genes regulated by Hfq (PAR-CLIP) |
| GSE220559 |
Comparative transcriptomic response analysis of Escherichia coli K-12 MG1655 to nine antibiotics |
| GSE226433 |
Enterococcus feacalis effect on Enteorhemorraghic E. coli |
| GSE240423 |
Comparative Transcriptomics Analysis of Shiga Toxin Producing Escherichia coli O157:H7 Grown in Bovine Rectoanal Junction Cells and Human Colonic Epithelial Cells |
| GSE248909 |
Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and PS micro-/nanoplastics stressed E. coli K-12 LE392, P. putida KT2440, and RP4 plasmid Transcriptomes |
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| Supplementary data files not provided |
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