|
Status |
Public on Aug 16, 2013 |
Title |
R0052 Genomic DNA |
Sample type |
genomic |
|
|
Source name |
Genomic DNA isolated from overnight culture
|
Organism |
Lactobacillus helveticus |
Characteristics |
strain: R0052
|
Treatment protocol |
No treatments were applied to cells prior to DNA isolation
|
Growth protocol |
All cultures were grown in MRS broth at 37C for 24 hours before Genomic DNA was isolated
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Genomic DNA was isolated using the Masterpure Gram Positive DNA Purification Kit from Epicentre Biotechnologies (Cat. No. #MGP04100
|
Label |
biotin
|
Label protocol |
Biotinylated DNA was prepared according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
|
|
|
Hybridization protocol |
Done according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
|
Scan protocol |
Done according to the standard Affymetrix protocol (Expression Analysis Technical Manual, 2001, Affymetrix).
|
Description |
Genomic DNA
|
Data processing |
The data were analyzed with R/Bioconductor using RMA as the normilization method.
|
|
|
Submission date |
Aug 16, 2010 |
Last update date |
Aug 16, 2013 |
Contact name |
Jeff Broadbent |
E-mail(s) |
broadbent.jeff@gmail.com, rlthompson28@hotmail.com
|
Phone |
435-797-2146
|
Fax |
435-797-2379
|
Organization name |
Utah State University
|
Department |
NFS
|
Street address |
750 N 120 E
|
City |
Logan |
State/province |
UT |
ZIP/Postal code |
84322 |
Country |
USA |
|
|
Platform ID |
GPL9271 |
Series (1) |
GSE23660 |
Genome heterogeneity in Lactobacillus helveticus: Rethinking a “niche specialist”* |
|