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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 20, 2012 |
| Title |
Illumina MiSeq (Escherichia coli) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Escherichia coli |
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| Submission date |
Sep 20, 2012 |
| Last update date |
Sep 20, 2012 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (868)
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GSM1006933, GSM1006934, GSM1240003, GSM1240004, GSM1240005, GSM1240006
GSM1240007, GSM1240009, GSM1240010, GSM1581537, GSM1581538, GSM1581539, GSM1581540, GSM1581541, GSM1581542, GSM1581543, GSM1581544, GSM1581545, GSM1581546, GSM1581547, GSM1581548, GSM1581549, GSM1581550, GSM1581551, GSM1581552, GSM1581553, GSM1581554, GSM1581555, GSM1581556, GSM1581557, GSM1581558, GSM1581559, GSM1581560, GSM1581561, GSM1581562, GSM1581563, GSM1581564, GSM1581565, GSM1581566, GSM1581567, GSM1581568, GSM1581569, GSM1581570, GSM1581571, GSM1581572, GSM1581573, GSM1581574, GSM1581575, GSM1581576, GSM1581577, GSM1581578, GSM1581579, GSM1581580, GSM1581581, GSM1581582, GSM1581583, GSM1581584, GSM1581585, GSM1581586, GSM1581587, GSM1581588, GSM1581589, GSM1581590, GSM1581591, GSM1581592, GSM1581593, GSM1581594, GSM1581595, GSM1581596, GSM1581597, GSM1581598, GSM1581599, GSM1581600, GSM1581601, GSM1581602, GSM1581603, GSM1581604, GSM1585536, GSM1602341, GSM1602342, GSM1602343, GSM1602344, GSM1602345, GSM1602346, GSM1602347, GSM1602348, GSM1602349, GSM1602350, GSM1602351, GSM1602352, GSM1602353, GSM1602354, GSM1602355, GSM1602356, GSM1602357, GSM1602358, GSM1603380, GSM1603381, GSM1603382, GSM1603383, GSM1603384, GSM1603385, GSM1603386, GSM1603387, GSM1603388, GSM1603389, GSM1603390, GSM1603391, GSM1603392, GSM1603393, GSM1623160, GSM1623161, GSM1623162, GSM1623163, GSM1623164, GSM1623165, GSM1623166, GSM1623167, GSM1940472, GSM1940473, GSM1940474, GSM1940475, GSM1940476, GSM1940477, GSM1940478, GSM1940479, GSM1940480, GSM1940481, GSM1940482, GSM1940483, GSM1940484, GSM1940485, GSM1940486, GSM1940487, GSM1940488, GSM1940489, GSM1940490, GSM1940491, GSM1964686, GSM1964687, GSM1964688, GSM1964689, GSM2436618, GSM2516408, GSM2563998, GSM2563999, GSM2564000, GSM2564001, GSM2564002, GSM2564003, GSM2564004, GSM2564005, GSM2564006, GSM2564007, GSM2564008, GSM2564009, GSM2829281, GSM2829282, GSM2829283, GSM2829284, GSM2829285, GSM2829286, GSM2902866, GSM2902867, GSM2912987, GSM2912988, GSM2912989, GSM2912990, GSM2912991, GSM2912992, GSM2912993, GSM2912994, GSM2912995, GSM2912996, GSM2912997, GSM2912998, GSM2912999, GSM2913000, GSM2913001, GSM2913002, GSM2914313, GSM2914314, GSM2914315, GSM2914316, GSM2914317, GSM2914318, GSM2914319, GSM2914320, GSM2914321, GSM2914322, GSM2914323, GSM2914324, GSM2914325, GSM2914326, GSM2914327, GSM2914328, GSM3132687, GSM3132688, GSM3188365, GSM3357733, GSM3392561, GSM3392562, GSM3392563, GSM3392564, GSM3392565, GSM3392566, GSM3392567, GSM3392568, GSM3392569, GSM3392570, GSM3392571, GSM3392572, GSM3392573, GSM3392574, GSM3392575, GSM3392576, GSM3392577, GSM3392578, GSM3463589, GSM3463590, GSM3463591, GSM3463592, GSM3463593, GSM3463594, GSM3463595, GSM3463596, GSM3463597, GSM3463598, GSM3463599, GSM3463600, GSM3463601, GSM3463602, GSM3566393, GSM3566394, GSM3566395, GSM3566396, GSM3636366, GSM3636367, GSM3636368, GSM3636369, GSM3636370, GSM3636371, GSM3636372, GSM3636373, GSM3636374, GSM3636375, GSM3636376, GSM3636377, GSM3636378, GSM3636379, GSM3636380, GSM3636381, GSM3636382, GSM3636383, GSM3785154, GSM3785155, GSM3785156, GSM3785157, GSM3785158, GSM3785159, GSM3847137, GSM3847138, GSM3847139, GSM3847140, GSM3847141, GSM3847142, GSM3847143, GSM3847144, GSM3847145, GSM3847146, GSM3847147, GSM3847148, GSM3847149, GSM3847150, GSM3847151, GSM3847152, GSM3847153, GSM3847154, GSM3847155, GSM3847156, GSM3847157, GSM3847158, GSM3847159, GSM3847160, GSM3847161, GSM3847162, GSM3847163, GSM3847164, GSM3847165, GSM3847166, GSM3847167, GSM3847168, GSM3847169, GSM3847170, GSM3847171, GSM3847172, GSM3847173, GSM3847174, GSM3847175, GSM3847176, GSM3847177, GSM3847178, GSM3847179, GSM3847180, GSM3847181, GSM3847182, GSM3847183, GSM3847184, GSM3847185, GSM3847186, GSM3847187, GSM3847188, GSM3847189, GSM3847190, GSM3847191, GSM3847192, GSM3847193, GSM3847194, GSM3847195, GSM3847196, GSM3847197, GSM3847198, GSM3847199, GSM3847200, GSM3847201, GSM3847202, GSM3847203, GSM3847204, GSM3847205, GSM3847206, GSM3847207, GSM3847208, GSM3847209, GSM3847210, GSM3847211, GSM3847212, GSM3847213, GSM3847214, GSM3847215, GSM3847216, GSM3847217, GSM3847218, GSM3847219, GSM3847220, GSM3847221, GSM3847222, GSM3847223, GSM3847224, GSM3847225, GSM3847226, GSM3847227, GSM3847228, GSM3847229, GSM3847230, GSM3847231, GSM3847232, GSM3847233, GSM3847234, GSM3847235, GSM3847236, GSM3847237, GSM3847238, GSM3847239, GSM3847240, GSM3847241, GSM3847242, GSM3847243, GSM3847244, GSM3847245, GSM3847246, GSM3847247, GSM3847248, GSM3847249, GSM3847250, GSM3847251, GSM3847252, GSM3847253, GSM3847254, GSM3847255, GSM3847256, GSM3847257, GSM3847258, GSM3847259, GSM3847260, GSM3847261, GSM3847262, GSM3847263, GSM3847264, GSM3847265, GSM3847266, GSM3847267, GSM3847268, GSM3847269, GSM3847270, GSM3847271, GSM3847272, GSM3847273, GSM3847274, GSM3847275, GSM3847276, GSM3847277, GSM3847278, GSM3847279, GSM3847280, GSM3847281, GSM3847282, GSM3847283, GSM3847284, GSM3847285, GSM3847286, GSM3847287, GSM3847288, GSM3847289, GSM3847290, GSM3847291, GSM3847292, GSM3847293, GSM3847294, GSM3847295, GSM3847296, GSM3847297, GSM3847298, GSM3847299, GSM3847300, GSM3847301, GSM3847302, GSM3847303, GSM3847304, GSM3847305, GSM3847306, GSM3847307, GSM3847308, GSM3847309, GSM3847310, GSM3847311, GSM3847312, GSM3847313, GSM3847314, GSM3847315, GSM3847316, GSM3847317, GSM3847318, GSM3847319, GSM3847320, GSM3847321, GSM3847322, GSM3847323, GSM3847324, GSM3847325, GSM3847326, GSM3847327, GSM3847328, GSM3847329, GSM3847330, GSM3847331, GSM3847332, GSM3847333, GSM3847334, GSM3847335, GSM3847336, GSM3847337, GSM3847338, GSM3847339, GSM3847340, GSM3847341, GSM3847342, GSM3847343, GSM3847344, GSM3847345, GSM3847346, GSM3847347, GSM3847348, GSM3847349, GSM3847350, GSM3847351, GSM3847352, GSM3847353, GSM3847354, GSM3847355, GSM3847356, GSM3847357, GSM3847358, GSM3847359, GSM3847360, GSM3847361, GSM3847362, GSM3847363, GSM3847364, GSM3847365, GSM3847366, GSM3847367, GSM3847368, GSM3847369, GSM3847370, GSM3847371, GSM3847372, GSM3847373, GSM3847374, GSM3847375, GSM3847376...
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| Series (71)
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| GSE41022 |
CpG underrepresentation and the new bacterial CpG specific DNA methyltransferase M.MpeI |
| GSE51170 |
Identification of building principles of methylation states at CG rich regions by high-throughput editing of a mammalian genome |
| GSE64847 |
Integrated analysis of molecular and systems level function of the Crp regulon [ChIP-exo] |
| GSE64848 |
Integrated analysis of molecular and systems level function of the Crp regulon [RNA-Seq] |
| GSE64849 |
Integrated analysis of molecular and systems level function of the Crp regulon |
| GSE64990 |
No evidence for a C. elegans small RNA response to feeding with OxyS-expressing bacteria |
| GSE65641 |
Systems approach elucidates convoluted transcriptional regulation on carbon metabolism [ChIP-seq] |
| GSE65642 |
Systems approach elucidates convoluted transcriptional regulation on carbon metabolism [RNA-seq] |
| GSE65643 |
Systems approach elucidates convoluted transcriptional regulation on carbon metabolism |
| GSE65710 |
Genome-wide OxyR and SoxRS transcriptional regulatory networks coordinate complex cellular responses to oxidative stress [ChIP-seq] |
| GSE65711 |
Genome-wide OxyR and SoxRS transcriptional regulatory networks coordinate complex cellular responses to oxidative stress [RNA-seq] |
| GSE65712 |
Genome-wide OxyR and SoxRS transcriptional regulatory networks coordinate complex cellular responses to oxidative stress |
| GSE66481 |
Decoding genome-wide GadEWX transcriptional regulatory networks reveals a multifaceted cellular response to acid stress in Escherichia coli [RNA-seq] |
| GSE66482 |
Decoding genome-wide GadEWX transcriptional regulatory networks reveals a multifaceted cellular response to acid stress in Escherichia coli |
| GSE75009 |
Engineering an allosteric transcription factor to respond to new ligands |
| GSE75718 |
Deep sequencing data for PAM-SCANR tested CRISPR-Cas systems |
| GSE92734 |
Genome-wide Transcription-coupled Repair in E.coli is Mediated by the Mfd Protein |
| GSE95567 |
In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding |
| GSE97406 |
Role of CRP K100 positive charge on Escherichia coli global transcriptome |
| GSE108535 |
Systematic Dissection of Sequence Elements Controlling σ70 Promoters Using a Genomically-Encoded Multiplexed Reporter Assay in E. coli |
| GSE108758 |
Activation of the stringent response by loading of tRNA-RelA complexes at the ribosomal A-site |
| GSE108846 |
Adaptation of commensal proliferating Escherichia coli to the intestinal tract of young children with cystic fibrosis |
| GSE114098 |
A Combined Approach Reveals a Regulatory Mechanism Coupling Src's Kinase Activity, Localization, and Phosphotransferase-Independent Functions |
| GSE115725 |
The mechanistic basis of diverse, environmentally dependent genetic interaction in a metabolic pathway |
| GSE117737 |
Full-length RNA profiling reveals pervasive bidirectional transcription terminators in bacteria |
| GSE119094 |
Single-nucleotide-resolution sequencing of human N6-methyldeoxyadenosine reveals strand-asymmetric clusters associated with SSBP1 in the mitochondrial genome |
| GSE120052 |
Bacterial RNase III cleaves long dsRNA at preferred sites |
| GSE122296 |
Expression profiling of multiple Escherichia coli strains on glucose minimal media |
| GSE125959 |
A positive, growth-based PAM screen reveals non-canonical motifs recognized by the S. pyogenes Cas9 |
| GSE127679 |
The role of archaeal histones in gene expression - a synthetic biology perspective [Escherichia coli] |
| GSE127680 |
The role of archaeal histones in gene expression - a synthetic biology perspective |
| GSE132139 |
Determinants for efficient editing with Cas9-mediated recombineering in Escherichia coli |
| GSE133289 |
Library selection with a randomized repertoire of (βa)8-barrel enzymes results in unexpected induction of gene expression |
| GSE134335 |
A Quantitative Method for Proteome Reallocation Using Minimal Regulatory Interventions |
| GSE135211 |
PAIR-MaP visualizes RNA base pairing complexity in human and bacterial non-coding RNAs |
| GSE137922 |
Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays |
| GSE140211 |
Response of E. coli to m-Tyrosine |
| GSE142656 |
A simple, cost-effective, and robust method for rRNA depletion in RNA-sequencing studies |
| GSE143629 |
CRISPR/Cas9 recombineering-mediated deep mutational scanning of essential genes in Escherichia coli |
| GSE144819 |
Structural and Functional Characterization of G Protein-Coupled Receptors with Deep Mutational Scanning |
| GSE147614 |
Comparative tRNA-seq for rapid profiling of tRNA modifications in a non-model organism |
| GSE150416 |
The RelA hydrolase domain acts as a molecular switch for (p)ppGpp synthesis |
| GSE158477 |
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation [MPRA] |
| GSE159312 |
Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE) |
| GSE175456 |
Deep Representation Learning Improves Prediction of LacI-mediated Transcriptional Repression |
| GSE178530 |
Deep sequencing data from PFS screen of SuCas12a2 CRISPR-Cas nuclease |
| GSE178531 |
Deep sequencing data from crRNA processing by SuCasΩ |
| GSE178536 |
Cas12a2 elicits abortive infection through RNA-triggered destruction of dsDNA |
| GSE179614 |
Rapid cell-free characterization of multi-subunit CRISPR effectors and transposons |
| GSE181416 |
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation |
| GSE185893 |
E. coli SymE-SPA binds DNA in a wide variety of genomic locations in vivo [ChIP-seq] |
| GSE188639 |
A single-cell massively parallel reporter assay detects cell type specific cis-regulatory activity |
| GSE189154 |
Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions |
| GSE190495 |
Drug resistance profiling of thousands of Src kinase mutants uncovers a regulatory network that couples autoinhibition to catalytic domain dynamics |
| GSE196821 |
RNA Post-transcriptional Modifications in Two Large Subunit Intermediates Populated in E.coli Cells Expressing Helicase Inactive R331A DbpA |
| GSE201062 |
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination [probes_assay] |
| GSE201064 |
Transcriptome-wide profiling and quantification of N6-methyladenosine by enzyme-assisted adenosine deamination |
| GSE202972 |
Generation of synthetic Acinetobacter baumannii specific nanobodies |
| GSE207195 |
Profiling the intragenic toxicity determinants of the hok/Sok toxin-antitoxin system |
| GSE211446 |
Deep sequencing data from PAM screen of Pa83 type IV-A CRISPR-Cas system |
| GSE212064 |
RfaH counter-silences inhibition of transcript elongation by H-NS–StpA H-NS nucleoprotein filaments in pathogenic E. coli |
| GSE224403 |
Promoter CpG content regulates DNMT-dependent silencing dynamics |
| GSE225383 |
Enhanced DMS-MaP enables superior RNA structural analysis |
| GSE228146 |
The SMC like protein RecN is at the crossroads of Genotoxic Stress Responses in Escherchia coli |
| GSE232539 |
RNA Post-transcriptional Modifications of an Early-Stage Large Subunit Ribosomal Intermediate |
| GSE235661 |
Interrogation of RNA-protein interaction dynamics in bacterial growth |
| GSE240200 |
Profiling tRNA modifications in Mycobacterium tuberculosis |
| GSE246134 |
Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes |
| GSE249103 |
A Whole-Cell Screening Platform for Discovering Cell Adhesion Molecules Enabling Programmable Bacterial Cell-Cell Adhesion |
| GSE253191 |
Dual Barcode is Essential for the Specificity of DSB Repair Capture |
| GSE254843 |
Experimental tests strongly challenge the evidence of a healthy human blood microbiome |
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| Supplementary data files not provided |
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